View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959-Insertion-7 (Length: 576)
Name: NF4959-Insertion-7
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959-Insertion-7 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 31966692 - 31966203
Alignment:
| Q |
8 |
aacattccatcttatctcaatcatcctagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatcaatgaacttta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31966692 |
aacattccatcttatctcaatcatcctagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatcaacgaacttta |
31966593 |
T |
|
| Q |
108 |
gtcttttatgtctggctttgaactcgaaacgcagcacaattcttcctccagcagcgaatggagatgattaaggggaatacaatccaagagaaatttgctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966592 |
gtcttttatgtctggctttgaactcgaaacgcagcacaattcttcctccagcagcgaatggagatgattaaggggaatacaatccaagagaaatttgctc |
31966493 |
T |
|
| Q |
208 |
caatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagcagttccatatagttgacccaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
31966492 |
caatgtagtatgcatagtagtaaaatgaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagcagttccgtatagttgatccaa |
31966393 |
T |
|
| Q |
308 |
tgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaacaatgatattagaaataata |
407 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966392 |
tgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaacaatgatattagaaataata |
31966293 |
T |
|
| Q |
408 |
aatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaatgcggacatcacaata |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966292 |
aatcaaagaagataaaacataaattggctagtgttgcatagaccaaatacaaagtacaaataaaacatacacaatgcggacatcacaata |
31966203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 34 - 432
Target Start/End: Complemental strand, 31959676 - 31959281
Alignment:
| Q |
34 |
tagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatcaatgaactttagtcttttatgtctggctttgaactcg |
133 |
Q |
| |
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|||| ||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
31959676 |
tagtcatcattattctttgctctaagatcatcaaaactgatgacaacctgaaaaatctgcatcaacgaactttagtctttcttgtctggctttgaactcg |
31959577 |
T |
|
| Q |
134 |
aaacgcagcacaattcttcctccagcagcgaatggagatgattaaggggaatacaatccaagagaaatttgctccaatgtagtatgcatagtagtaaaat |
233 |
Q |
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||| ||||| | | |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31959576 |
aaatgcagcgctgattttcctccagcagcgaatggaaatgatcgaggggatgacaatccaagagaaatttgctccaatgtaatatgcatagtagtaaaat |
31959477 |
T |
|
| Q |
234 |
gaatttgtagaaaaattatcgccttccaaaatcgttgttatataatatgcagcagttccatatagttgacccaatgaaacggcaaattgaagtatatagc |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||| |
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| T |
31959476 |
gaatttgtagaaaaattatcgccttccaaaatcgctgttatataatatgttgcagttccatatagctgacccaatgaaacggcaaattgaaggatgtagc |
31959377 |
T |
|
| Q |
334 |
tgtatgatttcccagtagctattgcatatctgtcatacatttagaaaacacaaacaatgatattagaaataataaatcaaagaagataaaacataaatt |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||| |||| | |||||| ||||||||||||||||| |
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| T |
31959376 |
tgtatgatttcccagtagctattgcatatctgtcatacattaagaaaatacaaacagtgagattaaaaatgaaaaatca---aagataaaacataaatt |
31959281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 422
Target Start/End: Original strand, 20981688 - 20981811
Alignment:
| Q |
300 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta |
398 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| || || |||||||||| |||||||||||||||| |||||| ||| ||||||||||||||| ||| |||| |
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| T |
20981688 |
tgacccaaagaaatggcaagttgaagtatgtaactctatgatttcctagtagctattgcatatttgtcatccatattagaaaacacaaactgtgagatta |
20981787 |
T |
|
| Q |
399 |
gaaataataaatcaaagaagataa |
422 |
Q |
| |
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|||| |||| ||||||||||||| |
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| T |
20981788 |
aaaatgataattcaaagaagataa |
20981811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 20971281 - 20971348
Alignment:
| Q |
302 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcat |
369 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||| |
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| T |
20971281 |
acccaaagaaacggcaaattgaagtatgtatatgtatgatttcctagtagctattgcatatttgtcat |
20971348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 20973509 - 20973566
Alignment:
| Q |
300 |
tgacccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattg |
357 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20973509 |
tgacccaaagaaacaacaaattgaagtatgtagctgtatgatttcctagtagctattg |
20973566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 30457 - 30371
Alignment:
| Q |
302 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
387 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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| T |
30457 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
30371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 41403878 - 41403964
Alignment:
| Q |
302 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaa |
387 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| ||||| |
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| T |
41403878 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaaaacaaa |
41403964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 7135 - 7215
Alignment:
| Q |
302 |
acccaatgaaacggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaa |
381 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||| |||||||| |
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| T |
7135 |
acccaaagaaacggcaaattgaagtatatatatgtatgatttcctagtagctattgcatatttgtcatccatattagaaaa |
7215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 432
Target Start/End: Complemental strand, 13445892 - 13445768
Alignment:
| Q |
314 |
ggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatatta-----gaaataata |
407 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||| ||| |||||||||| || || || ||||||||||||||||| |||| |||| |||| |
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| T |
13445892 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaagaata |
13445793 |
T |
|
| Q |
408 |
aatcaaagaagataaaacataaatt |
432 |
Q |
| |
|
||| |||| |||||||||||||||| |
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|
| T |
13445792 |
aataaaagtagataaaacataaatt |
13445768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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