View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959-Insertion-8 (Length: 476)
Name: NF4959-Insertion-8
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959-Insertion-8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 216 - 476
Target Start/End: Original strand, 30248954 - 30249214
Alignment:
| Q |
216 |
atgcagtttaatttagaaattaagaagttaaacttttatttctagtgactaaattcttagtttatagatccgacaagaaactatatttttatttcaattg |
315 |
Q |
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| T |
30248954 |
atgcagtttaatttagaaattaagaagttaaacttttatttctagtgactaaattcttagtttataaatccgacaagaaactatatttttatttcaattg |
30249053 |
T |
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| Q |
316 |
agaaatttccaaaatttaaaagataatataaatttgaagtgaatattaatannnnnnnagtctttgatttcagtgacatggactctcatctacctgttcc |
415 |
Q |
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| T |
30249054 |
agaaatttccaaaatttaaaagataatataaatttgaagtgaatattaatatttttttagtctttgatttcagtgacatggactctcatctacctgttcc |
30249153 |
T |
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| Q |
416 |
taaagtttataattacaaataagtttaatttatataagaaatgtcgtaatatctagtaatc |
476 |
Q |
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| T |
30249154 |
taaagtttataattacaaataagtttaatttatataagaaatgttgtaatatctagtaatc |
30249214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 30248744 - 30248875
Alignment:
| Q |
7 |
aggattaccgtgataaatcataaactctagacatagatcaacttttgtgaccctcaagaagtatttgaattgaaattaagatcaaatagtatcaaggcta |
106 |
Q |
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| T |
30248744 |
aggattaccgtgataaatcataaactctagacatagatcaacttttgcgaccctcaagaagtatttgaattgaaattaaaatcaaatagtatcaaggcta |
30248843 |
T |
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| Q |
107 |
ataatgattaaatatttcaacacaatggttga |
138 |
Q |
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| T |
30248844 |
ataatgattaaatatttcaacacaatggttga |
30248875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 30787460 - 30787561
Alignment:
| Q |
374 |
agtctttgatttcagtgacatggactctcatctacctgttcctaaagtttataattacaaataagtttaatttatataagaaatgtcgtaatatctagta |
473 |
Q |
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| T |
30787460 |
agtctttgatttcagtgatatg-actctcatctagctattcctaatgtttataattacaaatgagtttaattaatataagaaatgttgtaatatccagta |
30787558 |
T |
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| Q |
474 |
atc |
476 |
Q |
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||| |
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| T |
30787559 |
atc |
30787561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 30787372 - 30787458
Alignment:
| Q |
219 |
cagtttaatttagaaattaagaagttaaacttttatttctagtgactaaattcttagtttatagatccgacaagaaactatattttt |
305 |
Q |
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| T |
30787372 |
cagtttaatttagaaattatgatgttaaacttttatttctagtgactaaactcttggtttataaattcgatacgaaactatgttttt |
30787458 |
T |
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