View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_high_10 (Length: 236)

Name: NF4959_high_10
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_high_10
NF4959_high_10
[»] chr1 (6 HSPs)
chr1 (1-223)||(16442241-16442463)
chr1 (1-223)||(16425963-16426185)
chr1 (18-223)||(16439089-16439294)
chr1 (1-202)||(16414581-16414782)
chr1 (1-220)||(16419032-16419251)
chr1 (154-215)||(33768470-33768531)
[»] chr8 (9 HSPs)
chr8 (69-212)||(2050742-2050885)
chr8 (3-222)||(10768409-10768628)
chr8 (114-212)||(2055196-2055294)
chr8 (161-212)||(2029543-2029594)
chr8 (168-213)||(2022974-2023019)
chr8 (114-211)||(2034055-2034152)
chr8 (171-212)||(2046915-2046956)
chr8 (169-212)||(1948561-1948604)
chr8 (156-212)||(2058062-2058118)
[»] chr2 (1 HSPs)
chr2 (164-219)||(28742427-28742482)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16442463 - 16442241
Alignment:
Q  1 tggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16442463 tggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagatattggttgtgctgagggcttatctgcttttggcca 16442364  T
Q  101 ctattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16442363 ctattatccatcctgtcctgaaccagaattaactttaggaacagtaaaacacgtcgatattgatttcatcacagtgcttctacaagatcatataggtggc 16442264  T
Q  201 ctccaagttcttcataaggatat 223  Q
    |||||||||||||||||||||||    
T  16442263 ctccaagttcttcataaggatat 16442241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16426185 - 16425963
Alignment:
Q  1 tggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggcca 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16426185 tgggtactttagtgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagatattggttgtgctgagggcttatctgcttttggcca 16426086  T
Q  101 ctattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggc 200  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16426085 ctattatccatcatgtcctgaaccagaattaactataggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggc 16425986  T
Q  201 ctccaagttcttcataaggatat 223  Q
    |||||||||||||||||||||||    
T  16425985 ctccaagttcttcataaggatat 16425963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 16439089 - 16439294
Alignment:
Q  18 gagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggccactattatccatcctgtc 117  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| | ||| || |||||||||| ||||| || ||||   |||| |    
T  16439089 gagttactatcagaagctcttggtctaaatccaagctatttaatagatattggttgtacggagagcctatctgctttcggccattactatctggcctgcc 16439188  T
Q  118 ctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataa 217  Q
    ||||||| ||  ||||||| |||||  ||||||| || ||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  16439189 ctgaacccgagttaactttgggaaccataaaacatgcagatgttgatttcatcacggtgcttctacaagatcatacaggtggtctccaagttcttcataa 16439288  T
Q  218 ggatat 223  Q
     |||||    
T  16439289 agatat 16439294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 16414782 - 16414581
Alignment:
Q  1 tggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggcca 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  16414782 tgggaactttactgtttgagttactatcagaagctcttggtctgaattcaacctatttaacagacattggttgtgctgagggcttttatgcttttggcca 16414683  T
Q  101 ctattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggc 200  Q
     || |||||| ||||||||||||| ||| |||||||||||||   |||||| |  ||  | | |||| | ||| ||||||||||||||||| ||||||||    
T  16414682 ttactatccaccctgtcctgaaccggaattaactttaggaacctcaaaacatgttgacgtggttttccttacactgcttctacaagatcatgtaggtggc 16414583  T
Q  201 ct 202  Q
    ||    
T  16414582 ct 16414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 16419251 - 16419032
Alignment:
Q  1 tggggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggcca 100  Q
    |||||||  ||||| | ||||||||||| |||||| |||||||||| |||| |||||||||||| ||||||||| | ||| || |||||||||| |  ||    
T  16419251 tggggacaatattgctcgagttactatctgaagcttttggtctaaatccaagctatttaatagatattggttgttccgagcgcctatctgctttcgcgca 16419152  T
Q  101 ctattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggc 200  Q
     || |||||| ||||| ||||  ||||| ||||||| |||||  |||| || || ||| |  |||||||||  |||||||||||||||||||||||||||    
T  16419151 ttactatccagcctgttctgagacagaattaactttgggaaccataaagcatgctgatgtaaatttcatcagtgtgcttctacaagatcatataggtggc 16419052  T
Q  201 ctccaagttcttcataagga 220  Q
    ||||| ||||||||||||||    
T  16419051 ctccaggttcttcataagga 16419032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 33768531 - 33768470
Alignment:
Q  154 ccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcat 215  Q
    |||||||||||||||| ||| | ||||||||||| || || ||||| || ||||||||||||    
T  33768531 ccgatattgatttcatgacaattcttctacaagaccagatcggtggtcttcaagttcttcat 33768470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 2050742 - 2050885
Alignment:
Q  69 ggttgtgctga-gggcttatctgcttttggccactattatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttc 167  Q
    ||||||||||| ||||| || |||| || |||| ||||||||  | ||||||||||||||| | ||| | ||||||  ||| ||  | |||| |||||||    
T  2050742 ggttgtgctgaagggctaat-tgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttc 2050840  T
Q  168 atcacagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
     ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2050841 ctcacagtgcttcttcaagaccatattggtggcctccaagttctt 2050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 10768409 - 10768628
Alignment:
Q  3 gggactttattgtttgagttactatcagaagctcttggtctaaacccaacctatttaatagacattggttgtgctgagggcttatctgcttttggccact 102  Q
    |||||||||||||||||  ||   ||||||||| | ||||| || |||| | || ||| ||| |||| ||||||||| || |||  |||| | || || |    
T  10768409 gggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccatctaaaagatattgattgtgctgaaggattacttgctctcggtcatt 10768508  T
Q  103 attatccatcctgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcct 202  Q
    |||||||  | ||||||||||||||| | ||| | ||||||   || ||  | |||| ||||||| |||| |||||||| ||||| ||||| ||||||||    
T  10768509 attatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtggcct 10768608  T
Q  203 ccaagttcttcataaggata 222  Q
    |||||||||| || ||||||    
T  10768609 ccaagttctttatcaggata 10768628  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 2055196 - 2055294
Alignment:
Q  114 tgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
    ||||||||||||||| | ||| | ||||||  ||| ||  | |||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2055196 tgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctt 2055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 2029543 - 2029594
Alignment:
Q  161 tgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
    ||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  2029543 tgatttcctcacagtgcttctccaagaccatattggtggcctccaagttctt 2029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 2022974 - 2023019
Alignment:
Q  168 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 213  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  2022974 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 2023019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 2034055 - 2034152
Alignment:
Q  114 tgtcctgaaccagaactaactttaggaacagtaaaacacgccgatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttct 211  Q
    ||||||||||||||| | ||| ||||||||  ||| ||  | |||| ||||||| ||||||||||||||||||| ||| | ||||| || ||||||||    
T  2034055 tgtcctgaaccagaattgactgtaggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatgttggtggtcttcaagttct 2034152  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 2046915 - 2046956
Alignment:
Q  171 acagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  2046915 acagtgcttctacaagaccatataggtggtctccaagttctt 2046956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 1948604 - 1948561
Alignment:
Q  169 tcacagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||    
T  1948604 tcacagtgcttctacaagaccatattggtggtctccaagttctt 1948561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 2058062 - 2058118
Alignment:
Q  156 gatattgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt 212  Q
    |||| ||||||| | ||| ||||||||||||| ||||| ||||| ||||||||||||    
T  2058062 gataatgatttcctgacaatgcttctacaagaccatattggtggtctccaagttctt 2058118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 28742482 - 28742427
Alignment:
Q  164 tttcatcacagtgcttctacaagatcatataggtggcctccaagttcttcataagg 219  Q
    |||| ||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  28742482 tttcctcacagtgcttcttcaagaccatattggtggccttcaagttcttcacaagg 28742427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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