View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959_high_4 (Length: 454)
Name: NF4959_high_4
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 29096066 - 29096489
Alignment:
| Q |
17 |
catttgtctttaattgattaaagagtaagtaaaaggagtctttttattnnnnnnnnttgtgaatttcagatacaaatatggctggctatggcttatgagg |
116 |
Q |
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| T |
29096066 |
catttgtctttaattgattaaagagtaagtaaaaggagtctttttattaaaaaaa-ttgtgaatttcagatacaaatatggctggctatggcttatgagg |
29096164 |
T |
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| Q |
117 |
ccaataatcgccataaagattgcattgatctttacaagcaattagaaaagtcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacat |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29096165 |
ccaataatcgccataaagattgcattgctctttacaagcaattagaaaattcgcaccctagtattagcatcaaacgtcaagctgcagaacttcgttacat |
29096264 |
T |
|
| Q |
217 |
tttggaagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29096265 |
tttggaagcaccaaagctcaagataacgcaagaagagatggtgactatacccttgattggttccagttatgacaggtcatttgactcttcatgttactaa |
29096364 |
T |
|
| Q |
317 |
ttaagattcattcaagtctatttgtttattacattcttgattttcctttggaatatgatgatgttgtttttcatgtttgtttccattgctttcttgctga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29096365 |
ttaagattcattcaagtctatttgtttattacattcttgattttcctttggaatatgatgatgttgtttttcatgtttgtttccattgctttcttgctga |
29096464 |
T |
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| Q |
417 |
taagatcactagttcttagatgata |
441 |
Q |
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| T |
29096465 |
taagatcactagttcttagatgata |
29096489 |
T |
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