View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_high_7 (Length: 324)

Name: NF4959_high_7
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_high_7
NF4959_high_7
[»] chr2 (1 HSPs)
chr2 (17-307)||(42815339-42815630)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 42815630 - 42815339
Alignment:
Q  17 catttgaagacaaaacaaccattccatctttaagagccagtccagaagttcatctgtcacatagacttgaaaatatggaacttatctagttcaatgttcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42815630 catttgaagacaaaacaaccattccatctttaagagccagtccagaagttcatctgtcacatagacttgaaaatatggaacttatctagttcaatgttcc 42815531  T
Q  117 agctacatatgaggcattcatgtgcatagacactactttaactttagcataaatatttggaatgtagtatatattacatattatattagtacataatata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42815530 agctacatatgaggcattcatgtgcatagacactactttaactttagcataaatatttggaatgtagtatatattacatattatattagtacataatata 42815431  T
Q  217 ggaagataaaggtcataaaggagaaaacccaatatt-tannnnnnnatttgggtttttcatggccattctttgtgttgtattatcttcaact 307  Q
    |||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||| |||||||||    
T  42815430 ggaagataaaggtcataaaggagaaaacccaatattattattttttatttgggtttttcatggccattctttgtgttgtattgtcttcaact 42815339  T

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