View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4959_high_9 (Length: 250)
Name: NF4959_high_9
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 10688727 - 10688944
Alignment:
| Q |
14 |
aggtacggatacaataccaagtgtaacaaatacaacggtttacagaaattaaggtaagtcaataaaaaa-caagattctatcataaaaag-aaactcaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
10688727 |
aggtacggatacaataccaagtgtaacaaatacaacggtttaaagaaattaaggtaagtcaataaaaaaacaagattctttcataaaaaggaaactcaaa |
10688826 |
T |
|
| Q |
112 |
tatgcaaataatattggtatcgaacaagtttcacgcatattggtattggaggctagctcttacatttttgtagaaaaaacatcacctgtttttcattttc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10688827 |
tatgcaaataatattgatatcgaacaagtttcacgcatattggtataggagactagctcttacatttttgaagaaaaaacatcacctgtttttcattttc |
10688926 |
T |
|
| Q |
212 |
ttcaagagcattaatcagg |
230 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
10688927 |
tt-aagagcattaatcagg |
10688944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University