View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4959_low_1 (Length: 561)
Name: NF4959_low_1
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 117 - 544
Target Start/End: Original strand, 42845757 - 42846193
Alignment:
| Q |
117 |
tcttaatatttgtgttattatctctaaacatacaaaaaatggtctctatttaaattttattttatgcttaaaaagacattgggtcgaccctgactcacat |
216 |
Q |
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| T |
42845757 |
tcttaatatttgtgttattatctctaaacatacaaaaaatggtctctatttaaattttattctatgcttaaaaagacattgggtcgaccctaactcacat |
42845856 |
T |
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| Q |
217 |
gccaacataattatattgatatcaatttcattcaccatggttcatgaacaaaaacatagaaacatatataaatcagaannnnnnnaattctactagtatc |
316 |
Q |
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| T |
42845857 |
gccaacataattatattgatatcaatttcattcaccatggttcatgaacaaaaacatagaaacatatataaatcagaatttttttaattctactagtatc |
42845956 |
T |
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| Q |
317 |
acaaagaaatgaagtcagacattgatttgc---------tgatgctctgccatagcagacagccagacacgcatgcataaaattgctacatgacaataac |
407 |
Q |
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| T |
42845957 |
acaaagaaatcaagtcagacattgatttgcttaaagagatgatgctctgccatagcagacagccagacacgcatgcataaaattgctacatgacaataac |
42846056 |
T |
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| Q |
408 |
aaacccatatcaaaagtactcctccacaaatgaataatatagtggctcataaactaacctaggagaagaaagaacaaagttaagagtacgaatggtcatt |
507 |
Q |
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| T |
42846057 |
aaacccatatcaaaagtactcctccacaaatgaataatatagtggctcataaactaacctaggagaagaaagaacaaagttaagagtacgaatggtcatt |
42846156 |
T |
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| Q |
508 |
catatgtctttcaatctattattcacaagactcaact |
544 |
Q |
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| T |
42846157 |
catatgtctttcaatctattattcacaagactcaact |
42846193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 42845687 - 42845733
Alignment:
| Q |
13 |
aatatgatgaaataaagtttgatttccaaccaaaaaatgctcatatt |
59 |
Q |
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| T |
42845687 |
aatatgatgaaacaaagtttgatttccaaccaaaaaatgctcatatt |
42845733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 31985110 - 31985142
Alignment:
| Q |
117 |
tcttaatatttgtgttattatctctaaacatac |
149 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
31985110 |
tcttaatttttgtgttattatctctaaacatac |
31985142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 31989434 - 31989466
Alignment:
| Q |
117 |
tcttaatatttgtgttattatctctaaacatac |
149 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
31989434 |
tcttaatttttgtgttattatctctaaacatac |
31989466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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