View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_low_2 (Length: 475)

Name: NF4959_low_2
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_low_2
NF4959_low_2
[»] chr3 (8 HSPs)
chr3 (64-470)||(40400591-40401026)
chr3 (305-436)||(13705946-13706079)
chr3 (58-196)||(13705780-13705907)
chr3 (48-196)||(3103259-3103396)
chr3 (307-436)||(3103087-3103218)
chr3 (431-470)||(3103038-3103077)
chr3 (431-470)||(13706089-13706128)
chr3 (219-277)||(19163460-19163516)
[»] chr1 (15 HSPs)
chr1 (32-196)||(25467770-25467934)
chr1 (305-436)||(6600446-6600579)
chr1 (305-435)||(42939137-42939269)
chr1 (55-196)||(42938967-42939097)
chr1 (305-436)||(22339389-22339522)
chr1 (34-196)||(6600249-6600403)
chr1 (305-433)||(25467593-25467728)
chr1 (218-293)||(16932346-16932421)
chr1 (141-196)||(22339562-22339617)
chr1 (48-96)||(22339620-22339668)
chr1 (36-89)||(17588155-17588208)
chr1 (146-200)||(16932433-16932487)
chr1 (389-436)||(16932217-16932264)
chr1 (431-470)||(25467541-25467580)
chr1 (431-466)||(6600589-6600624)
[»] chr8 (16 HSPs)
chr8 (48-293)||(43904221-43904451)
chr8 (48-293)||(32754702-32754929)
chr8 (48-196)||(42421076-42421224)
chr8 (287-436)||(32754533-32754683)
chr8 (305-436)||(42421265-42421400)
chr8 (311-413)||(43904486-43904589)
chr8 (62-203)||(20305409-20305562)
chr8 (62-203)||(21092042-21092195)
chr8 (53-112)||(22894179-22894238)
chr8 (227-293)||(22894009-22894073)
chr8 (144-201)||(44412001-44412058)
chr8 (325-369)||(22893758-22893802)
chr8 (431-470)||(32754484-32754523)
chr8 (431-470)||(42421410-42421449)
chr8 (431-470)||(43904615-43904654)
chr8 (150-186)||(22894104-22894140)
[»] chr7 (11 HSPs)
chr7 (48-433)||(35716207-35716597)
chr7 (55-196)||(34785303-34785433)
chr7 (311-436)||(28999217-28999344)
chr7 (305-436)||(34785471-34785604)
chr7 (48-194)||(28999385-28999520)
chr7 (349-436)||(20655907-20655996)
chr7 (144-201)||(40119928-40119985)
chr7 (431-470)||(28999168-28999207)
chr7 (431-470)||(34785614-34785653)
chr7 (431-469)||(35716156-35716194)
chr7 (48-100)||(40119979-40120031)
[»] chr6 (7 HSPs)
chr6 (55-196)||(14400421-14400562)
chr6 (286-436)||(11194691-11194839)
chr6 (305-436)||(14400601-14400734)
chr6 (52-196)||(13090688-13090821)
chr6 (302-436)||(13090857-13090993)
chr6 (218-293)||(11194598-11194673)
chr6 (431-470)||(13091003-13091042)
[»] chr2 (13 HSPs)
chr2 (55-192)||(22546833-22546970)
chr2 (305-436)||(29391405-29391538)
chr2 (33-201)||(29391572-29391734)
chr2 (55-201)||(43959530-43959668)
chr2 (305-436)||(22546658-22546791)
chr2 (305-436)||(45224132-45224265)
chr2 (304-436)||(43959406-43959537)
chr2 (55-196)||(45223966-45224096)
chr2 (58-196)||(16939519-16939642)
chr2 (58-196)||(17010184-17010307)
chr2 (302-436)||(16939353-16939487)
chr2 (302-436)||(17010018-17010152)
chr2 (431-470)||(45224275-45224314)
[»] chr5 (8 HSPs)
chr5 (311-436)||(26628353-26628479)
chr5 (55-293)||(26628098-26628318)
chr5 (305-436)||(23550759-23550892)
chr5 (55-196)||(30220581-30220711)
chr5 (305-436)||(30220752-30220884)
chr5 (51-196)||(23550585-23550719)
chr5 (431-470)||(26628489-26628528)
chr5 (436-470)||(30220899-30220933)
[»] scaffold0024 (2 HSPs)
scaffold0024 (305-436)||(157201-157334)
scaffold0024 (55-201)||(157030-157165)
[»] chr4 (5 HSPs)
chr4 (305-436)||(42364033-42364166)
chr4 (305-436)||(11276090-11276223)
chr4 (60-201)||(42364203-42364325)
chr4 (48-100)||(11275954-11276006)
chr4 (151-196)||(11276006-11276051)
[»] scaffold0368 (2 HSPs)
scaffold0368 (305-435)||(4694-4826)
scaffold0368 (55-196)||(4524-4654)
[»] scaffold0743 (3 HSPs)
scaffold0743 (48-196)||(2733-2870)
scaffold0743 (328-436)||(2902-3004)
scaffold0743 (431-470)||(3014-3053)
[»] scaffold0583 (3 HSPs)
scaffold0583 (305-436)||(5245-5378)
scaffold0583 (67-196)||(5089-5206)
scaffold0583 (431-470)||(5388-5427)
[»] scaffold0252 (1 HSPs)
scaffold0252 (217-292)||(18179-18256)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 64 - 470
Target Start/End: Complemental strand, 40401026 - 40400591
Alignment:
Q  64 tgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctat 163  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  40401026 tgccggagcgctacgcaacaagtcataatgttgcggtgtgagatagcggtgctatagcggcgcaacacttcgtagcagttttgcgatttagaatcgctat 40400927  T
Q  164 ttcattttaagagaaaatacaaaattgtccttgattttttttnnnnnnnnnnngagggtatttttgacattttcatcaaaccctaaaaagttcagcttct 263  Q
    ||||||||||||||||||||||||||||||||| |||||||             ||||||||||||||||||| ||||||||||||||||||||||||||    
T  40400926 ttcattttaagagaaaatacaaaattgtccttggttttttt---aaaagaaacaagggtatttttgacatttttatcaaaccctaaaaagttcagcttct 40400830  T
Q  264 cacttccttctttcattcttac------------------gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgt 345  Q
    | ||||||||||| ||||||||                  |||||| |||  |||||| ||||||||||||||| |||||||||||||||||| || |||    
T  40400829 ctcttccttcttttattcttacgcaaaatcgtgtttatctgcaaaatgcaccttctctctgcttttctgctgttctgtgaaacttcttcacctttgctgt 40400730  T
Q  346 aaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaaactctgttgtcctgttac--------------ttt 430  Q
    | ||||||||| | ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| | ||||||||||||||              |||    
T  40400729 atatcttcctc-attttgtcgtgtttgctttgttatcctgttatttttttgtttaacaatctcaaaatttgttgtcctgttacttttttgttctagtttt 40400631  T
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40400630 tttgttattattgattccaaactccattatgctctctctg 40400591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 13705946 - 13706079
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  13705946 tgcttttctgctgttttgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 13706045  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||| |||||||||||||||||||||||    
T  13706046 tctcaaaactttgttgtcctgttacttttttgtt 13706079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 13705780 - 13705907
Alignment:
Q  58 gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||  |||||||||||||||||    
T  13705780 gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagtggttttgcggtttagaac 13705868  T
Q  158 cgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13705869 cgctatttcattttaagagaaaatacaaaattgtccttg 13705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 3103396 - 3103259
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||           |||||||||||||||| |||||||    
T  3103396 cggccgcacggtgcggtgccagagcgctacgcaacaagccatagcgttgcagtgtgagatagcgg-----------cgcaacgcttcgtagcggttttgc 3103308  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103307 agtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 3103259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 307 - 436
Target Start/End: Complemental strand, 3103218 - 3103087
Alignment:
Q  307 cttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatc 405  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||    
T  3103218 cttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttttctctgttatcctgttatttttttgtttaacaatc 3103119  T
Q  406 tc-aaactctgttgtcctgttacttttttgtt 436  Q
    || |||| | ||| ||||||||||||||||||    
T  3103118 tcaaaaccccgttttcctgttacttttttgtt 3103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 3103077 - 3103038
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  3103077 tttgttattattgattccaaactccattctgctctctctg 3103038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 13706089 - 13706128
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13706089 tttgttattattgattccaaactccattctgctctctctg 13706128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 19163516 - 19163460
Alignment:
Q  219 gggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttc 277  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||  ||||||||||||    
T  19163516 gggtatttttgacattttcatcgaaccctaaataattcagcttct--cttccttctttc 19163460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 25467934 - 25467770
Alignment:
Q  32 ccatagtagtcaataccggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgc 131  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25467934 ccatagtagtcaatagcggccacgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcagtgtgagatagcggcgctatagcggcgcaacgc 25467835  T
Q  132 ttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25467834 ttcgtagtggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 25467770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 6600446 - 6600579
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  6600446 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 6600545  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||||||||||||||||||||||    
T  6600546 tctcaaaactctgttgtcctgttacttttttgtt 6600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 42939137 - 42939269
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  42939137 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 42939236  T
Q  404 tctc-aaactctgttgtcctgttacttttttgt 435  Q
    |||| ||||||||||||||||||||||||||||    
T  42939237 tctcaaaactctgttgtcctgttacttttttgt 42939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 42938967 - 42939097
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||||| ||||||||||||||    
T  42938967 gcggtgcggtgccggagcgctactcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtttag 42939055  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  42939056 aaccgctatttcattttaagagaaaatacaaaagtgtccttg 42939097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 22339522 - 22339389
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 403  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  22339522 tgcttttcttctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 22339423  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||| |||||||||||||||||||||||    
T  22339422 tctcaaaactttgttgtcctgttacttttttgtt 22339389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 6600249 - 6600403
Alignment:
Q  34 atagtagtcaataccggccgcgcggtgcggtgc-----cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaa 128  Q
    ||||||||||||| |||||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||| ||           |||||    
T  6600249 atagtagtcaatagcggccgcgcggtgcggtgcggtgccggagcgcttcgcaacaagccatagcgttgcggtgtgagatagtgg-----------cgcaa 6600337  T
Q  129 cgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  6600338 cgcttcgtagcggttttgcggttt-gaaccgctatttcatttt-agagaaaatacaaaattgtccttg 6600403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 433
Target Start/End: Complemental strand, 25467728 - 25467593
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctcta-----ctttgtcgtgtttgctctgttatcatgtta-ttttttgttt 398  Q
    ||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||     |||||||||||||||||||||||| ||||| ||||||||||    
T  25467728 tgcttttctgctgttctgtaaaacttcttaacctttgctgtaaatcttcctctactttactttgtcgtgtttgctctgttatcctgttatttttttgttt 25467629  T
Q  399 aataatctc-aaactctgttgtcctgttactttttt 433  Q
    || |||||| ||||||||||||||||||||||||||    
T  25467628 aacaatctcaaaactctgttgtcctgttactttttt 25467593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 16932421 - 16932346
Alignment:
Q  218 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16932421 agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg 16932346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 22339617 - 22339562
Alignment:
Q  141 gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22339617 gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 22339562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 22339668 - 22339620
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttg 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22339668 cggccgcacggtgcggtgccggagcgctacgcaacaagccatagcgttg 22339620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 17588155 - 17588208
Alignment:
Q  36 agtagtcaataccggccgcgcggtgcggtgccggagcgctacgcaacaagccat 89  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  17588155 agtagtcaatagcggccccgcggtgcggtgctggagcgctacgcaacaagccat 17588208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 16932487 - 16932433
Alignment:
Q  146 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgattt 200  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||    
T  16932487 gcggtttggaaccactattacattttaagagaaaatacaaaattgtccttggttt 16932433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 16932264 - 16932217
Alignment:
Q  389 ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 436  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  16932264 ttttttgtttaacaatctcatactctgttgtcctattacttttttgtt 16932217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 25467580 - 25467541
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  25467580 tttgttattattgattccaaactccattctgctctctctg 25467541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 466
Target Start/End: Original strand, 6600589 - 6600624
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctc 466  Q
    |||||||||||||||||||||||||||| |||||||    
T  6600589 tttgttattattgattccaaactccattctgctctc 6600624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 48 - 293
Target Start/End: Original strand, 43904221 - 43904451
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | |||| ||| ||||| |||||||    
T  43904221 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcgg-----------cacaacactttgtagcggttttgc 43904309  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgattttttttnnnnnnnnnnngagggtatttttgacattttcatcaaaccct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||               |||||||||||||||||||||||||||||||    
T  43904310 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttggtttt----aaaaaaaaagagagggtatttttgacattttcatcaaaccct 43904405  T
Q  248 aaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43904406 aaaaagttcagcttctctcttccttctttcattcttacgcaaaacg 43904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 48 - 293
Target Start/End: Complemental strand, 32754929 - 32754702
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||| ||||||||| ||||||     
T  32754929 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcgg-----------cgcaac-cttcgtagcggttttgt 32754842  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgattttttttnnnnnnnnnnngagggtatttttgacattttcatcaaaccct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||                ||||||||||||||| ||||||||||||||    
T  32754841 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttggtttt-----aaaaaaaaacaagggtatttttgaca-tttcatcaaaccct 32754748  T
Q  248 aaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32754747 aaaaagttcagcttctctcttccttctttcattcttacgcaaaacg 32754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 42421076 - 42421224
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  42421076 cggccgcgcggtgcggtgccggagcggtacgcaacaagccataacgttgcggtgtgagatagcagcgctatagcggcgcaacacttcgtagcggttttgc 42421175  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42421176 ggtttagaaccgcaatttcattttaagagaaaatacaaaattgtccttg 42421224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 287 - 436
Target Start/End: Complemental strand, 32754683 - 32754533
Alignment:
Q  287 caaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgt 386  Q
    |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  32754683 caaaacacatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgt 32754584  T
Q  387 tatt-ttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  32754583 tatttttttgtttaacaatctcaaactctgttgtcctgttacttttttgtt 32754533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 42421265 - 42421400
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatttt---ttgtttaat 401  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||||   ||||||||     
T  42421265 tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatctttctctactttgttgtgtttgctttgttatcctgttattttttgttgtttaac 42421364  T
Q  402 aatctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||||| |||||||||||||||||||||||||||||    
T  42421365 aatctcaaaactctgttgtcctgttacttttttgtt 42421400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 43904486 - 43904589
Alignment:
Q  311 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa 409  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| ||||||||    
T  43904486 tctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttcgctcagttatcctgttatttttttgtttaacaatctcaa 43904585  T
Q  410 actc 413  Q
    ||||    
T  43904586 actc 43904589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 20305562 - 20305409
Alignment:
Q  62 ggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcgg------------ 149  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||| |||  |  |||||||||  |||||||||                
T  20305562 ggtgccggaatgctacgcaacaagctatagcgttgcggtgtgagatagcggcgctatagtggccaatagcttcgtagtggttttgcgggctgggttgcgg 20305463  T
Q  150 tttagaaccgctatttcattttaagagaaaatacaaaattgtccttgatttttt 203  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  20305462 tttagaaccactattacattttaagagaaaatacaaaattgtccttggtttttt 20305409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 21092195 - 21092042
Alignment:
Q  62 ggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcgg------------ 149  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||| |||  |  |||||||||  |||||||||                
T  21092195 ggtgccggaatgctacgcaacaagctatagcgttgcggtgtgagatagcggcgctatagtggccaatagcttcgtagtggttttgcgggctgggttgcgg 21092096  T
Q  150 tttagaaccgctatttcattttaagagaaaatacaaaattgtccttgatttttt 203  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  21092095 tttagaaccactattacattttaagagaaaatacaaaattgtccttggtttttt 21092042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 22894238 - 22894179
Alignment:
Q  53 gcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcgg 112  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  22894238 gcgcggtgcggtgctggagcgctacgcaacaagccataatgttgcggtgtgagatagcgg 22894179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 22894073 - 22894009
Alignment:
Q  227 ttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    ||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||    
T  22894073 ttgacattttcatcaaaccttataaagttcagcttc-ca-ttccttctttcattcttacgcaaaacg 22894009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 44412001 - 44412058
Alignment:
Q  144 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    ||||| |||| |||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  44412001 ttgcgttttaaaaccgctattacattttaagagaaaatacacaattgtccttggtttt 44412058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 22893802 - 22893758
Alignment:
Q  325 aaacttcttcacctctgatgtaaatcttcctctactttgtcgtgt 369  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  22893802 aaactttttcacctctgctgtaaatcttcctctactttgtcgtgt 22893758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 32754523 - 32754484
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  32754523 tttgttattattgattccaaactccattctgctctctctg 32754484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 42421410 - 42421449
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42421410 tttgttattattgattccaaactccattattctctctctg 42421449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 43904615 - 43904654
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  43904615 tttgttattattgattccaaactccattctgctttctctg 43904654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 22894140 - 22894104
Alignment:
Q  150 tttagaaccgctatttcattttaagagaaaatacaaa 186  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  22894140 tttagcaccgctattacattttaagagaaaatacaaa 22894104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 48 - 433
Target Start/End: Complemental strand, 35716597 - 35716207
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| |           ||||||||||||||||  |||||     
T  35716597 cggccgcgcggtgcggtgctggcgcactacgcaacaagccatagcgttgcggtatgagatagcag-----------cgcaacgcttcgtagcgattttgt 35716509  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgattttttttnnnnnnnnnnngagggtatttttgacattttcatcaaaccct 247  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||                |||||||||||||||||||||| |||||||    
T  35716508 ggtttagaactgctatttcactttaagagaaaatacaaaattgtccttggtttt-----aaaaaaaaacaagggtatttttgacattttcattaaaccct 35716414  T
Q  248 aaaaagttcagcttctcacttccttctttcattcttacgcaaaacg------------------catattctctttgcttttctgctgttttgtgaaact 329  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||                  ||| |||||| ||||||||||||||| ||| |||||    
T  35716413 aaaaagttcagcttctctcttccttctttctttcttgcgcaaaacggcgtttatctgcaaaaagcatcttctctctgcttttctgctgttctgtaaaact 35716314  T
Q  330 tcttcacctctgat--gtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctcaaactctgttgtcctgtta 426  Q
    |||||||||||     ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||||  ||||||||||    
T  35716313 tcttcacctctacaccgtaaatcttcctctactttgtcgtgtttgctttgttatcctgttatttttttgtttaacaatctcaaactctactgtcctgtta 35716214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 34785303 - 34785433
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||  |||||| ||||||    
T  34785303 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcgattttgcagtttag 34785391  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34785392 aaccgctatttcattttaagagaaaatacaaaattgtccttg 34785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 311 - 436
Target Start/End: Complemental strand, 28999344 - 28999217
Alignment:
Q  311 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-a 408  Q
    |||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |    
T  28999344 tctgcttttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaatctcaa 28999245  T
Q  409 aactctgttgtcctgttacttttttgtt 436  Q
    ||||||||||||||||||||||||||||    
T  28999244 aactctgttgtcctgttacttttttgtt 28999217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 34785471 - 34785604
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    |||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||    
T  34785471 tgctttgctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 34785570  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||||||||||||||||||| |||||||    
T  34785571 tctcaaaactctgttgtcctgttactattttgtt 34785604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 28999520 - 28999385
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |           |||||||||| ||||| |||||||    
T  28999520 cggccgtgcggtgcggtgccggagcgctacgcaacaagccataacgttgcggtgtgagatagcag-----------cgcaacgctttgtagcggttttgc 28999432  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtcct 194  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  28999431 agtttagaaccgctatttcattttaagagaaaatacaaaattgtcct 28999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 436
Target Start/End: Complemental strand, 20655996 - 20655907
Alignment:
Q  349 tcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  20655996 tcttcctctactttgtcgcgtttgctctgttatcctgttatttttttgtttaacaatctcaaaactctgttgtcctgttacttttttgtt 20655907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 40119985 - 40119928
Alignment:
Q  144 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    |||||||||| |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  40119985 ttgcggtttaaaaccgctattacattctaagagaaattacaaaattgtccttggtttt 40119928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 28999207 - 28999168
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28999207 tttgttattattgattccaaactccattctgctctctctg 28999168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 34785614 - 34785653
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34785614 tttgttattattgattccaaactccattctgctctctctg 34785653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 35716194 - 35716156
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctct 469  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  35716194 tttgttattattgattccaaactccattctgctctctct 35716156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 40120031 - 40119979
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggt 100  Q
    ||||||||| ||||||||| ||| |||  ||||||||||||||||||||||||    
T  40120031 cggccgcgctgtgcggtgcgggaccgccgcgcaacaagccatagcgttgcggt 40119979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 14400421 - 14400562
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| ||||||||| ||||||||||||||    
T  14400421 gcggtgcggtgccggagcgctacgcaacaagccatagtgttgcggtgtgagatggtggagctatagcggcgcaacccttcgtagcagttttgcggtttag 14400520  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14400521 aaccgctatttcattttaagagaaaatacaaaattgtccttg 14400562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 286 - 436
Target Start/End: Original strand, 11194691 - 11194839
Alignment:
Q  286 gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatg 385  Q
    |||||||| || |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  11194691 gcaaaacgtatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctg 11194790  T
Q  386 tta-ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 436  Q
    ||| |||||||||||| ||||||||||||   |||||| |||||||||||||    
T  11194791 ttatttttttgtttaacaatctcaaactc---tgtcctattacttttttgtt 11194839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 14400601 - 14400734
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||    
T  14400601 tgcttttctgctgttctggaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 14400700  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||||| |||||||||||||||||||||    
T  14400701 tctcaaaactctattgtcctgttacttttttgtt 14400734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 13090688 - 13090821
Alignment:
Q  52 cgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtt 151  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||           ||||||||||||||||||| |||||||||||    
T  13090688 cgcgcggtgcggtgccgaagcgctacgcaacaagccataacattgcagtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtt 13090776  T
Q  152 tagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  13090777 tagaactgctatttcattttaagagaaaatacaaaattgtccttg 13090821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 302 - 436
Target Start/End: Original strand, 13090857 - 13090993
Alignment:
Q  302 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaa 400  Q
    |||||||||| ||||||| |   ||||||||||| || || |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  13090857 ctttgcttttttgctgttctacaaaacttcttcatctttgctgtaaatcttcctctactttgtcgtgtttgctctgttattctgttatttttttgtttaa 13090956  T
Q  401 taatctc-aaactctgttgtcctgttacttttttgtt 436  Q
     |||||| ||||| ||||||| |||||||||||||||    
T  13090957 caatctcaaaactttgttgtcttgttacttttttgtt 13090993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 11194598 - 11194673
Alignment:
Q  218 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  11194598 agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg 11194673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 13091003 - 13091042
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13091003 tttgttattattgattccaaactccattctgctctctctg 13091042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 22546970 - 22546833
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||||||||||||    
T  22546970 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggcgctatagcagtgcaacgcttcgtggcggttttgcggtttag 22546871  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtc 192  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  22546870 aaccgctatttcattttaagagaaactacaaaattgtc 22546833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 29391538 - 29391405
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  29391538 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 29391439  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||||||||||||||||||||||    
T  29391438 tctcaaaactctgttgtcctgttacttttttgtt 29391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 29391734 - 29391572
Alignment:
Q  33 catagtagtcaataccggccgcgcggtgcggtgc-----cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgca 127  Q
    |||||||||||||| |||||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||||||           ||||    
T  29391734 catagtagtcaatagcggccgcgcggtgcggtgcggtgccggagcgctacgcaaaaagccatagcgttgcggtgtgagatagcgg-----------cgca 29391646  T
Q  128 acgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29391645 atgcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttggtttt 29391572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 43959668 - 43959530
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||        |||||||||    
T  43959668 gcggtgcggtgctggagcgctacgcaacaagccatagcgttgcggtgtgagatagaagcgctatagcggcgcaaggcttcgta--------gcggtttag 43959577  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  43959576 aaccgctatttcattttaagagaaaatacaaaattgtccttgctttt 43959530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 22546791 - 22546658
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 403  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||    
T  22546791 tgcttttctgctgttctgttaaacttcttcacttctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 22546692  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||||||||||||||||||||||    
T  22546691 tctcaaaactctgttgtcctgttacttttttgtt 22546658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 45224132 - 45224265
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||| ||    
T  45224132 tgcttttctgctgttctgtaaaacttcttcacctctgttgtaaatcttcctctgctttgtcgtgtttgctctgttaccctgttatttttttgtttaacaa 45224231  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||||||||||||||||||||||    
T  45224232 tctcaaaactctgttgtcctgttacttttttgtt 45224265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 304 - 436
Target Start/End: Complemental strand, 43959537 - 43959406
Alignment:
Q  304 ttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaata 402  Q
    |||||||||||||||| ||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |    
T  43959537 ttgcttttctgctgttctgtaaaacttcttcacctctg---taaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaca 43959441  T
Q  403 atctc-aaactctgttgtcctgttacttttttgtt 436  Q
    ||||| |||||||||||||||||||||||||||||    
T  43959440 atctcaaaactctgttgtcctgttacttttttgtt 43959406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 45223966 - 45224096
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||           ||||||||||||||  ||| |||||| |||||||    
T  45223966 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaacgcttcacagcggttttgtggtttag 45224054  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45224055 aaccgctatttcattttaagagaaaatacaaaattgtccttg 45224096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 16939642 - 16939519
Alignment:
Q  58 gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac 157  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||       |||||||||||||        ||||||||||    
T  16939642 gtgcggtgccggagcgctacgcaacaagccatagcattgcagtgtgagatagcggtgatata-------aacgcttcgtagc--------ggtttagaac 16939558  T
Q  158 cgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16939557 cgctatttcattttaagagaaaatacaaaattgtccttg 16939519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 17010307 - 17010184
Alignment:
Q  58 gtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaac 157  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||       |||||||||||||        ||||||||||    
T  17010307 gtgcggtgccggagcgctacgcaacaagccatagcattgcagtgtgagatagcggtgatata-------aacgcttcgtagc--------ggtttagaac 17010223  T
Q  158 cgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17010222 cgctatttcattttaagagaaaatacaaaattgtccttg 17010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 302 - 436
Target Start/End: Complemental strand, 16939487 - 16939353
Alignment:
Q  302 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa 400  Q
    |||||||||| || |||| |||  ||||| |||||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| |||||||    
T  16939487 ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa 16939390  T
Q  401 taatctca-aactctgttgtcctgttacttttttgtt 436  Q
     ||||||| ||||||||||||||||||||||| ||||    
T  16939389 caatctcagaactctgttgtcctgttacttttgtgtt 16939353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 302 - 436
Target Start/End: Complemental strand, 17010152 - 17010018
Alignment:
Q  302 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa 400  Q
    |||||||||| || |||| |||  ||||| |||||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| |||||||    
T  17010152 ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa 17010055  T
Q  401 taatctca-aactctgttgtcctgttacttttttgtt 436  Q
     ||||||| ||||||||||||||||||||||| ||||    
T  17010054 caatctcagaactctgttgtcctgttacttttgtgtt 17010018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 45224275 - 45224314
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  45224275 tttgttattattgattccaaactccattctgctctctctg 45224314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 311 - 436
Target Start/End: Original strand, 26628353 - 26628479
Alignment:
Q  311 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa 409  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||| ||    
T  26628353 tctgctgttttgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttgtcctgttatttttttgtttaacattcttaa 26628452  T
Q  410 actctgttgtcctgttacttttttgtt 436  Q
    |||||||||||||||||||||||||||    
T  26628453 actctgttgtcctgttacttttttgtt 26628479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 293
Target Start/End: Original strand, 26628098 - 26628318
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    |||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||           ||||||| ||||| ||||||||||||||    
T  26628098 gcggtgtggtgtcggagcgctacacaacaagccatagcgttgctgtgtgagatagcggtgc-----------aacgcttggtagcggttttgcggtttag 26628186  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttgattttttttnnnnnnnnnnngagggtatttttgacattttcatcaaaccctaaaaagt 254  Q
    ||| ||||||||||||||||||||||||| |||||||||||| |||                 ||||||||||| |||||||||||||||||||||||||    
T  26628187 aactgctatttcattttaagagaaaataccaaattgtccttggttt-------aaaaaaaacaagggtatttttaacattttcatcaaaccctaaaaagt 26628279  T
Q  255 tcagcttctcacttccttctttcattcttacgcaaaacg 293  Q
    |||||||| | ||||||||||||||||||| ||||||||    
T  26628280 tcagcttcgctcttccttctttcattcttatgcaaaacg 26628318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 23550759 - 23550892
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  23550759 tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaataa 23550858  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||| |||||||| ||||||||||||||||    
T  23550859 tctcaaaattctgttgttctgttacttttttgtt 23550892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 30220581 - 30220711
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |           |||||||||||||||| ||||| ||||||||    
T  30220581 gcggtgcggtgccggagcgctacgcaacaagccatagtgttgcggtgtgagatagctg-----------cgcaacgcttcgtagcggttttacggtttag 30220669  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30220670 aaccgctatttcattttaagagaaaatacaaaattgtccttg 30220711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 30220752 - 30220884
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  30220752 tgcttttctgctgttctgtaaaactt-ttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 30220850  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||| ||||||||||||||||||||    
T  30220851 tctcaaaactctgatgtcctgttacttttttgtt 30220884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 23550585 - 23550719
Alignment:
Q  51 ccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggt 150  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||           |||||||| |||| | ||| ||||||| ||    
T  23550585 ccgcgcggtgcggtaccggagcgctacgcaacaagccatagtgttgcggtgtgagatag-----------cggcgcaatgcttaggagcggttttgcagt 23550673  T
Q  151 ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23550674 ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 23550719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 26628489 - 26628528
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  26628489 tttgttattattgattccaaactccattctgctatctctg 26628528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 30220899 - 30220933
Alignment:
Q  436 tattattgattccaaactccattatgctctctctg 470  Q
    ||||||||||||||||||||||| |||||||||||    
T  30220899 tattattgattccaaactccattctgctctctctg 30220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 157201 - 157334
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  157201 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaaaa 157300  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||| |||||||||||||||||||||||    
T  157301 tctcaaaactttgttgtcctgttacttttttgtt 157334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 157030 - 157165
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||           |||||||||||||||| |||||| ||| |||    
T  157030 gcggtgcggttcctgagcgctacgcaacaagccatagcgttgcggtgtgagatagtgg-----------cgcaacgcttcgtagcggttttgaggtctag 157118  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  157119 aaccgctatttcattttaagagaaaatacaaaattgtccttggtttt 157165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 42364166 - 42364033
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 403  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  42364166 tgcttttctgctgttctgtaaaactttttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 42364067  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| |||||||||||||||||||||||||||||    
T  42364066 tctcaaaactctgttgtcctgttacttttttgtt 42364033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 11276090 - 11276223
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||  |||||||| ||||| ||||| |||||||||||| ||    
T  11276090 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctacttcgtcgcatttgctctattatcttgttatttttttgtttaacaa 11276189  T
Q  404 tctca-aactctgttgtcctgttacttttttgtt 436  Q
    ||||| ||||||||||| ||||||||||||||||    
T  11276190 tctcataactctgttgttctgttacttttttgtt 11276223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 42364325 - 42364203
Alignment:
Q  60 gcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccg 159  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||           ||||||||||| ||||        ||||||||||||    
T  42364325 gcggtgccggagcgctacacaacaatccatagcgttgcggtgtgagatagcgg-----------cgcaacgcttcctagc--------ggtttagaaccg 42364245  T
Q  160 ctatttcattttaagagaaaatacaaaattgtccttgatttt 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  42364244 ctatttcattttaagagaaaatacaaaattgtccttggtttt 42364203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 11275954 - 11276006
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggt 100  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  11275954 cggccgtgcagtgcggtgccggagtgctacgcaacaagccatagcgttgcggt 11276006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 11276006 - 11276051
Alignment:
Q  151 ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||    
T  11276006 ttagaaccgctatttcgtttcaagagaaaatacaaaattgtccttg 11276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 4694 - 4826
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  4694 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 4793  T
Q  404 tctc-aaactctgttgtcctgttacttttttgt 435  Q
    |||| ||||||||||||||||||||||||||||    
T  4794 tctcaaaactctgttgtcctgttacttttttgt 4826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 4524 - 4654
Alignment:
Q  55 gcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttag 154  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||||| ||||||||||||||    
T  4524 gcggtgcggtgccggagcgctactcaacaagccatagcgttgcggtgtgagatag-----------cggcgcaacgcttcgtagcggttttgcggtttag 4612  T
Q  155 aaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4613 aaccgctatttcattttaagagaaaatacaaaagtgtccttg 4654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 2733 - 2870
Alignment:
Q  48 cggccgcgcggtgcggtgccggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgc 147  Q
    ||||||||||| ||| || |||||||||| |||||||||||||||||||| |||||||||||           |||||||| |||||||||| |||||||    
T  2733 cggccgcgcggagcgttgtcggagcgctatgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaaggcttcgtagcggttttgc 2821  T
Q  148 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2822 ggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 2870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 436
Target Start/End: Original strand, 2902 - 3004
Alignment:
Q  328 cttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttttgtttaataatctc-aaactctgttgtcctgtta 426  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||| ||||| |||||||||||||    
T  2902 cttcttcatctatgctgtaaatcttcctctactttgtcgtgtttgctctgttat-------ttttttgtttaacaatctcaaaactttgttgtcctgtta 2994  T
Q  427 cttttttgtt 436  Q
    ||||||||||    
T  2995 cttttttgtt 3004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 3014 - 3053
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  3014 tttgttattattgatttcaaactccattctgctctctctg 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 5245 - 5378
Alignment:
Q  305 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 403  Q
    ||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||    
T  5245 tgcttttttgctattctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcttgtttgctctgttatcctgttatttttttgtttaacaa 5344  T
Q  404 tctc-aaactctgttgtcctgttacttttttgtt 436  Q
    |||| ||||| ||||||| |||||||||||||||    
T  5345 tctcaaaactatgttgtcttgttacttttttgtt 5378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 5089 - 5206
Alignment:
Q  67 cggagcgctacgcaacaagccatagcgttgcggtgtgagatagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttc 166  Q
    ||||||||||||||||||||||||||||||| |||||||||||           |||||||||| || |||||||||||||||| |||||| ||||||||    
T  5089 cggagcgctacgcaacaagccatagcgttgcagtgtgagatag-----------cggcgcaacggtttgtagctgttttgcggtctagaactgctatttc 5177  T
Q  167 attttaagagaaaatacaaaattgtccttg 196  Q
    ||||||| ||||||||||||||||||||||    
T  5178 attttaa-agaaaatacaaaattgtccttg 5206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 5388 - 5427
Alignment:
Q  431 tttgttattattgattccaaactccattatgctctctctg 470  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  5388 tttgttattattgattccaaactccattctgctctctctg 5427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 18256 - 18179
Alignment:
Q  217 gagggtatttttgacattttcatcaaaccctaaaaagttcagcttctc--acttccttctttcattcttacgcaaaac 292  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||   |||| ||| ||||||||||||||||||    
T  18256 gagggtatttttgacagtttcatcaaaccctaaaaagttcagtttctcttccttctttcattcattcttacgcaaaac 18179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University