View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4959_low_5 (Length: 407)
Name: NF4959_low_5
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4959_low_5 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 24564994 - 24565336
Alignment:
| Q |
18 |
gaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564994 |
gaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaa |
24565093 |
T |
|
| Q |
118 |
tttgaatgacaaaaattcacatcaaaggtccgcatcctttgtataaagatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565094 |
tttgaatgacaaaaattcacatcaaaggtccgcatcctttgtataaagatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacata |
24565193 |
T |
|
| Q |
218 |
aattataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24565194 |
aattataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaatat------ataattgtcaaatcttaaaaaagtaa |
24565287 |
T |
|
| Q |
318 |
tatcttgaagaataaaaacttataatatttttctattttgaattataag |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565288 |
tatcttgaagaataaaaacttataatatttttctattttgaattataag |
24565336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 14164926 - 14165020
Alignment:
| Q |
19 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
113 |
Q |
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||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
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| T |
14164926 |
aaaaatgtggccttgatgctcaactcctttcctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
14165020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 45533076 - 45532792
Alignment:
| Q |
18 |
gaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaa |
117 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
45533076 |
gaaaaatgtggccttgatgccccactcctttcctatttcttgatcttttctctatctctacaaaaccaaatgtaataaagatcatttggtaaggatgaaa |
45532977 |
T |
|
| Q |
118 |
tttgaatgacaaaaattcacatcaaaggtccgcatcctttgta---------------taaagat----atacatattaagatgactaaatatgaaaaac |
198 |
Q |
| |
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||||||||||||||||||| ||||||||| | ||||||||||| || |||| ||| | ||||||||||||||||||||||||| |
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| T |
45532976 |
tttgaatgacaaaaattcagatcaaaggttcacatcctttgtaatttttcttataatgtatagataaagatatagattaagatgactaaatatgaaaaac |
45532877 |
T |
|
| Q |
199 |
taattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaat |
283 |
Q |
| |
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||||||||||||||||||| | ||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
45532876 |
taattctctcaaaaacatacaatataaacgattatgaaaaacatacttgacgggaaccagaaatctccatcataaattagaaaat |
45532792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 44339115 - 44339478
Alignment:
| Q |
18 |
gaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaa |
117 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||| ||||| ||||| | |||||||| ||||||||||||| |
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|
| T |
44339115 |
gaaaaatgtggccttgattctcccctcctttcctatttcttcatcttttctctgtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaa |
44339214 |
T |
|
| Q |
118 |
tttgaatgacaaaaattcacatcaaaggtccgcatccttt-------gtataaagat----atacatattaagatgactaaatatgaaaaactaattctc |
206 |
Q |
| |
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|| |||||| |||||| | ||||||||||| |||||||| || || |||| ||| | ||||| || ||| |||||||||||||||||||| |
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| T |
44339215 |
ttggaatgataaaaatcgaaatcaaaggtccacatccttttgttatagtgtatagataaagatatagattaaaattacttaatatgaaaaactaattctc |
44339314 |
T |
|
| Q |
207 |
tcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaatatataacgataattgtcaaatct |
306 |
Q |
| |
|
||||||||||||| || ||||||||| | | ||||||||| | |||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
44339315 |
tcaaaaacataaacta----------tgaaaaacacattggaagggaacgataaatatccatcgtaaattagaaaatat------ataattgtcaaatct |
44339398 |
T |
|
| Q |
307 |
taaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgat |
389 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||| |||| || |||||||||||| ||||||||||||||| ||||||| |
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| T |
44339399 |
aaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaattataattggtcatattataactcaatgat |
44339478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 44335859 - 44335499
Alignment:
| Q |
18 |
gaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaa |
117 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||| ||||| | |||||||| ||||||||||||| |
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|
| T |
44335859 |
gaaaaatgtggccttgatgctcccctcctttcctatttcttcatcttttctccgtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaa |
44335760 |
T |
|
| Q |
118 |
tttgaatgacaaaaattcacatcaaaggtccgcatcctt-------------tgtataaagatatacatattaagatgactaaatatgaaaaactaattc |
204 |
Q |
| |
|
|| |||||| |||||| | ||||||||||| ||||||| || |||||||||| | ||||| || || ||||||||||| |||||| |
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| T |
44335759 |
ttggaatgataaaaatcaaaatcaaaggtccacatccttttgttatagtgtatggataaagatat--agattaaaattccttaatatgaaaaattaattc |
44335662 |
T |
|
| Q |
205 |
tctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaatatataacgataattgtcaaat |
304 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||||||||| | |||| |||||| ||||||||||||||| ||||||||||||| |
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|
| T |
44335661 |
tctcaaaaacataaaata----------tgaaaaacatactcgaagggaacgataaatatccatcgtaaattagaaaatat------ataattgtcaaat |
44335578 |
T |
|
| Q |
305 |
cttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaat |
386 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||||| ||| |||| || |||||||||||| |||| |||||||||| |||| |
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|
| T |
44335577 |
ctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaattataactggtaatattataactcaat |
44335499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 45532795 - 45532704
Alignment:
| Q |
301 |
aaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgatcagtat |
395 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
45532795 |
aaatctttaaaatgtaatatctttaagaataaaaacttcaaatttttt---attttgaattataattggtcatattataacccaatgatgagtat |
45532704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 29633436 - 29633314
Alignment:
| Q |
26 |
tggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatg |
125 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||| || |||||| | |||| ||| ||||| |||||||| ||||||| | |||| || |||| ||||| |
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|
| T |
29633436 |
tggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaagtgtaataacgatcacttgctaagaatagaattggaatg |
29633337 |
T |
|
| Q |
126 |
acaaaaattcacatcaaaggtcc |
148 |
Q |
| |
|
| |||||| || || |||||||| |
|
|
| T |
29633336 |
ataaaaatccagattaaaggtcc |
29633314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 19190196 - 19190095
Alignment:
| Q |
174 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattct-gaaaaacatacttgaagggaaccagaaatgtccatcata |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
19190196 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaaatataaacaattctaaaaaaacatacttgaagggaaccagaaatgtcaatcata |
19190097 |
T |
|
| Q |
273 |
aa |
274 |
Q |
| |
|
|| |
|
|
| T |
19190096 |
aa |
19190095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 16351 - 16257
Alignment:
| Q |
19 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
113 |
Q |
| |
|
||||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
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|
| T |
16351 |
aaaaatgtggccttgatgctcaactccttttctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
16257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 23096176 - 23096260
Alignment:
| Q |
19 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcact |
103 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
23096176 |
aaaaatgtagccttgatgccccacccctttcctatttcttcaccttttctccatctcttcaaaaccaagtgtaataatgatcact |
23096260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 24867465 - 24867524
Alignment:
| Q |
43 |
tcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcac |
102 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||| ||||| | ||||||| ||||| |
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|
| T |
24867465 |
tcctttcctatttcttcttcttttcactgtctctacaaaaccaagtctaataaaaatcac |
24867524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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