View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_low_6 (Length: 377)

Name: NF4959_low_6
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_low_6
NF4959_low_6
[»] chr1 (9 HSPs)
chr1 (72-377)||(16442641-16442946)
chr1 (72-375)||(16427049-16427352)
chr1 (72-328)||(16438412-16438665)
chr1 (72-243)||(16417564-16417735)
chr1 (72-345)||(16416163-16416433)
chr1 (1-59)||(16442463-16442521)
chr1 (72-345)||(16499565-16499838)
chr1 (1-56)||(16426185-16426240)
chr1 (3-58)||(16419253-16419308)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 72 - 377
Target Start/End: Complemental strand, 16442946 - 16442641
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  16442946 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaaggttttttgagcaag 16442847  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442846 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaaccctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaa 16442747  T
Q  272 agataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgta 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442746 agataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgta 16442647  T
Q  372 tacttg 377  Q
    ||||||    
T  16442646 tacttg 16442641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 72 - 375
Target Start/End: Complemental strand, 16427352 - 16427049
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  16427352 gcatcagagatatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagtttttttgagcaag 16427253  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  16427252 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaaccctttgtgtataatagtaattataatcttctatatacatctgatccaattacttggaa 16427153  T
Q  272 agataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgta 371  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16427152 agataccttcctttgtaacagggctcctaatccccccaaaccagaagaccttccagctgtatgcaggtacttttcaacaatgtaatgaatccctaatgta 16427053  T
Q  372 tact 375  Q
    ||||    
T  16427052 tact 16427049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 72 - 328
Target Start/End: Original strand, 16438412 - 16438665
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||    
T  16438412 gcatcggagacatttgggttttttcagattgtaaatcatggcatcccagtgagtactttgaatgaaatgaaagatggggtggtaagtttttttgagcaag 16438511  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaa 271  Q
    |||||||||| |||||| ||| ||||||||| |||  || | ||||| ||||||||||||| | ||||||||   | || || | |||||  | ||||||    
T  16438512 atagtgaggtaaaaaaggaattttacactcgcgaacaaagaccctttatgtataatagtaactttaatctat---acacctcagctccaaccagttggaa 16438608  T
Q  272 agataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagc 328  Q
    |||||| ||| | || ||| ||||||||||||| ||||||||||||||||| |||||    
T  16438609 agatactttcttatgcaacatggctcctaatccacctaaaccagaagacctgccagc 16438665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 16417735 - 16417564
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |  |||| |||||||||||   |||       |||||||    
T  16417735 gcatcagagacatttgggttttttcagattgtaaatcatggcatcccactgagtactttggagaaaattaaagatggggtaaaaagtttctttgagcaag 16417636  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat 243  Q
    |||||||||| |||||||||| |||||||||||||   | | | ||| ||||||||||||||| ||||||||    
T  16417635 atagtgaggtaaaaaagaaattttacactcgtgaacatagaccttttctgtataatagtaattttaatctat 16417564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 72 - 345
Target Start/End: Complemental strand, 16416433 - 16416163
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||  |||       |||||||    
T  16416433 gcatcagagacatttgggttttttcagattgtaaatcatggcattccagtgagtactttggaggaaatgaaagatggggtgaaaagtttttttgagcaag 16416334  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat-tacatacatctgatccaattacttgga 270  Q
    ||||||||||||| ||| ||| ||| || ||||||   ||| | ||| || || ||||||||  |  ||||| |||   || | | | |   ||||||||    
T  16416333 atagtgaggtcaagaaggaattttatacacgtgaacataaaccttttatgcattatagtaatattgctctatatac-cgcaccagctgc---tacttgga 16416238  T
Q  271 aagataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtactttt 345  Q
    ||||| | |||||||| ||| ||||||||| ||||||||||||||||||||| |||| | |||||||||| ||||    
T  16416237 aagattctttcctttgcaacatggctcctattccccctaaaccagaagacctgccagttgtatgcaggtaatttt 16416163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16442463 - 16442521
Alignment:
Q  1 actttcattacatggttcaagtattccagcagtatgttcctataaacaaatgaaataaa 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442463 actttcattacatggttcaagtattccagcagtatgttcctataaacaaatgaaataaa 16442521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 345
Target Start/End: Original strand, 16499565 - 16499838
Alignment:
Q  72 gcatcagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaag 171  Q
    |||||||| ||| | |||||||| |||||||| |||||| |||||| ||||||||  ||||| |||||||||||||| ||||| ||       |||||||    
T  16499565 gcatcagaaacaatgggattttttcagattgtgaatcatagcatccaagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaag 16499664  T
Q  172 atagtgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat-tacatacatctgatccaattacttgga 270  Q
    ||||||||||||| ||| ||| ||| ||||||||   |||| | ||| ||||||||||||||| |  ||||| ||| | ||   | | ||| || |||||    
T  16499665 atagtgaggtcaagaaggaattttatactcgtgagcaaaaaccttttatgtataatagtaattttgctctatatacct-cacaagcttcaactaattgga 16499763  T
Q  271 aagataccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtactttt 345  Q
    ||||| | ||||| |  ||| || ||||||||||||||||||||||||| || |||| | |||||||||| ||||    
T  16499764 aagattctttcctctacaacatgtctcctaatccccctaaaccagaagatctcccagttgtatgcaggtaatttt 16499838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16426185 - 16426240
Alignment:
Q  1 actttcattacatggttcaagtattccagcagtatgttcctataaacaaatgaaat 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16426185 actttcattacatggttcaagtattccagcagtatgttcctataaataaatgaaat 16426240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 16419253 - 16419308
Alignment:
Q  3 tttcattacatggttcaagtattccagcagtatgttcctataaacaaatgaaataa 58  Q
    ||||||||| ||||||| |||||||| ||||||||| ||| |||||||||||||||    
T  16419253 tttcattacttggttcatgtattccaccagtatgtttctacaaacaaatgaaataa 16419308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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