View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_low_7 (Length: 355)

Name: NF4959_low_7
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_low_7
NF4959_low_7
[»] chr3 (12 HSPs)
chr3 (21-339)||(33397183-33397501)
chr3 (101-306)||(27004896-27005101)
chr3 (227-318)||(36876466-36876557)
chr3 (233-287)||(33093071-33093125)
chr3 (21-70)||(33708401-33708450)
chr3 (101-274)||(36810180-36810353)
chr3 (253-306)||(37579955-37580008)
chr3 (172-280)||(33708173-33708281)
chr3 (21-72)||(33714265-33714316)
chr3 (131-280)||(33714039-33714188)
chr3 (21-74)||(36876237-36876290)
chr3 (21-74)||(36810396-36810449)
[»] chr7 (2 HSPs)
chr7 (200-293)||(18723550-18723643)
chr7 (26-78)||(18723712-18723764)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 33397183 - 33397501
Alignment:
Q  21 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33397183 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatggagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 33397282  T
Q  121 tctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaa 220  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33397283 tctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaactcttgtagaaacacacagttcatacacaatagaaaa 33397382  T
Q  221 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  33397383 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcaaagcattattataattgtcac 33397482  T
Q  321 tgtcattggtgattatttt 339  Q
    |||||||||||||||||||    
T  33397483 tgtcattggtgattatttt 33397501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 101 - 306
Target Start/End: Complemental strand, 27005101 - 27004896
Alignment:
Q  101 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 200  Q
    ||||||||||||||||| ||||||||    ||||||||||||| ||||||| ||| ||| || ||||| | ||||||||  || | ||||||||||  ||    
T  27005101 gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac 27005002  T
Q  201 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcag 300  Q
    |||| | ||| | | |||||||    |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||    
T  27005001 agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttgagtaagaagctgtag 27004902  T
Q  301 agcatt 306  Q
    ||||||    
T  27004901 agcatt 27004896  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 36876466 - 36876557
Alignment:
Q  227 gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtc 318  Q
    |||||||||| |||||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||    
T  36876466 gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtc 36876557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 33093125 - 33093071
Alignment:
Q  233 ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgag 287  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  33093125 ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgag 33093071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 33708450 - 33708401
Alignment:
Q  21 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaag 70  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  33708450 acaaatcaagacaagttaagcgcttcaaactcatcaatgaatcaatgaag 33708401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 36810353 - 36810180
Alignment:
Q  101 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 200  Q
    |||| |||||||||||| |||||||| |  ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | |||    
T  36810353 gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac 36810254  T
Q  201 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagtttt 274  Q
    ||||| | |||| |   |||||    || |||| ||  ||||||| ||||||||| ||||||||| ||||||||    
T  36810253 agttcctgcacagttccaaaaacaatgaatcatcaatatagaaattaccagagaggttaaccttgtggagtttt 36810180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 37580008 - 37579955
Alignment:
Q  253 gagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcatt 306  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  37580008 gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcatt 37579955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 33708281 - 33708173
Alignment:
Q  172 gaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagt 271  Q
    |||||||| ||||||||| ||||||   ||||||||||| |   |||||||    |||||||| |||||| ||| ||| |||||||||||||| ||||||    
T  33708281 gaacataagcacctcttggagaaacttgcagttcatacatagctgaaaaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagt 33708182  T
Q  272 tttgaaagc 280  Q
    |||||||||    
T  33708181 tttgaaagc 33708173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 33714316 - 33714265
Alignment:
Q  21 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagta 72  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  33714316 acaaatcaagacaagttaagcgctttaaactcaccaatgaatcaatgaagta 33714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 33714188 - 33714039
Alignment:
Q  131 attgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagt 230  Q
    ||||||||||||| |||| || ||| ||   || |||||| | |||||||||||||||  ||||||   ||||||||||| |   |||||||    ||||    
T  33714188 attgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctttgagaaacttgcagttcatacatagctgaaaaaacaacgagt 33714089  T
Q  231 cattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagc 280  Q
    |||| || ||| ||| |||||||||||||||||| ||||||| |||||||    
T  33714088 catttacataggaattaccagagagattaaccttacggagttctgaaagc 33714039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 36876237 - 36876290
Alignment:
Q  21 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 74  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||  |||||||    
T  36876237 acaaatcaagacaagttaatcccttcaaactccacaatgaatcaacaaagtatg 36876290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 36810449 - 36810396
Alignment:
Q  21 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 74  Q
    |||||||| |||||||||||| ||||||||||  ||||||||||  ||||||||    
T  36810449 acaaatcatgacaagttaatcccttcaaactccccaatgaatcagcgaagtatg 36810396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 18723643 - 18723550
Alignment:
Q  200 cagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaa 293  Q
    ||||||||||||| | |||||||    || ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||| ||||    
T  18723643 cagttcatacacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaa 18723550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18723764 - 18723712
Alignment:
Q  26 tcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaaga 78  Q
    |||||||||||||| | ||||||||||  ||||||||||||||||||||||||    
T  18723764 tcaagacaagttaagcgcttcaaactcgccaatgaatcaatgaagtatgaaga 18723712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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