View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4959_low_9 (Length: 259)

Name: NF4959_low_9
Description: NF4959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4959_low_9
NF4959_low_9
[»] chr7 (3 HSPs)
chr7 (11-240)||(46703359-46703588)
chr7 (11-240)||(46130544-46130773)
chr7 (11-238)||(46124570-46124791)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 46703588 - 46703359
Alignment:
Q  11 agaatatcagtgctacagaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttcc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46703588 agaatatcagtgctaccgaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttcc 46703489  T
Q  111 ctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46703488 ctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataag 46703389  T
Q  211 agttcccgaaggccagacaatgctggtaag 240  Q
    ||||||||||||||||||||||||||||||    
T  46703388 agttcccgaaggccagacaatgctggtaag 46703359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 46130773 - 46130544
Alignment:
Q  11 agaatatcagtgctacagaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttcc 110  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46130773 agaatatcagtgctaccgaaaaacgacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttcc 46130674  T
Q  111 ctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataag 210  Q
    ||||| ||||||||||||||||| | |||||| |||| |||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  46130673 ctcaaggatagcttgaaccattttgcctgaaccatcccgagtaatccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataag 46130574  T
Q  211 agttcccgaaggccagacaatgctggtaag 240  Q
    |||||||||||||||| |||||||||||||    
T  46130573 agttcccgaaggccaggcaatgctggtaag 46130544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 46124791 - 46124570
Alignment:
Q  11 agaatatcagtgctacagaaaaaagacacaaata-tattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttc 109  Q
    |||||||||||||||| |||||||||||||||   ||||||||||| |       |||||||||||||||||||||||||||||||||||||||| |||     
T  46124791 agaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaat-------caaggacttacagtagtaactctacaagtcgtgggcaaaattttg 46124699  T
Q  110 cctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataa 209  Q
    |||||||||||||||||||||||| ||||||||  | |||||||| |||| |||| | |  |||||||||||||  ||||  ||||||||||||||||||    
T  46124698 cctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatcaggcatcaataa 46124599  T
Q  210 gagttcccgaaggccagacaatgctggta 238  Q
    ||| ||| |||||||||||||||||||||    
T  46124598 gagctcctgaaggccagacaatgctggta 46124570  T

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