View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4960-Insertion-1 (Length: 916)
Name: NF4960-Insertion-1
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4960-Insertion-1 |
 | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 7 - 586
Target Start/End: Original strand, 49128518 - 49129095
Alignment:
| Q |
7 |
acgtataacatgaactgcaagaagagaacctcttaccttgaccacatttattccaataaaaactttctatccacggagaagtacttacataactcctcct |
106 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49128518 |
acgtataacgtgaactgcaagaagagaacctcttaccttgaccacatttcttccaataaaaactttctatccacggagaagtacttacataactcctc-- |
49128615 |
T |
|
| Q |
107 |
ctatggatcacacatgcatttattttcgcccgcacagtttggtccacttgcaaagtcata---gtaaatgaagttgaagcaccggaaatactgaaagttt |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
49128616 |
-tatggatcacacgtgcatttattttcgcccgcacagtttggtccacttgcaaagtcataatagtaaatgaagttgaagcaccggaaatactgaaagctt |
49128714 |
T |
|
| Q |
204 |
tgcaaatatctcactcaaagagtattccgcatgttattatagaaagtgacaaaaatctgttgtagaagctatcaactcttcctccaacacgacaaatgaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49128715 |
tgcaaatatctcactcaaagagtattccgcatgttattatagaaagtgacaaaaatctgttgtagaagctatcaactcttcctccaacacgacaaatgaa |
49128814 |
T |
|
| Q |
304 |
ttgggagggataatgtccaaataccgctctatattttagttgaaaatcactacacagttgtatctgtccggagagacaagtcaacaaggttctccctact |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
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| T |
49128815 |
ttgggagggataatgtccaaataccgctctatattttagttgaaaatcactacacagttgtatctatccg--gagacaagtcaacaaggttctcccgact |
49128912 |
T |
|
| Q |
404 |
agtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaa |
503 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49128913 |
agtttcttgaaaacacctacttgagaatgcgatcaaactaaatgtggatgggagatctattggtaacctaagtcgttctgattattgtggtcttcttaaa |
49129012 |
T |
|
| Q |
504 |
aattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgt |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
49129013 |
aattcgttagggggttggatttttggctttttccaaagtttgtgattttacatctaatattaatgttgagtttcagactatgt |
49129095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 591 - 914
Target Start/End: Original strand, 49129406 - 49129730
Alignment:
| Q |
591 |
tggtctcgatctagcttggaatttgtggtcttcttgtaaatttgattttctctcagcgataaaattcatcaaaagagagagttccgcatcatccatatgc |
690 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
49129406 |
tggtctcgatctagcttggaatttgtggttttcttgtgaatttgattttctctcagcgataaaattcatcaaa-gagagagttccgcatcatccacatgc |
49129504 |
T |
|
| Q |
691 |
tgcgattgttaattacattagatccatgctgactaagaactgaaacattgttcttgtgcacaccttacgagaaggcgagaaggaaactcttgtgccgact |
790 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| || |||| |
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| T |
49129505 |
tgtgattgttgattacattagatccatgctgactaagaacttgaacattgttcttgtgcacatcttacgagaaagcgagaaggaaactcttgcgctgact |
49129604 |
T |
|
| Q |
791 |
g----atttgccaaatttagagctgctcttgataatgagaataaactttttaannnnnnnnnnccggcctttattgggctagtatattttgcttaactga |
886 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
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| T |
49129605 |
ggctaatttgccaaatttagagctgctcttgataatgagaataaacttttttaatttttttttccggcctttatt-ggctagtata-tttgcttaactga |
49129702 |
T |
|
| Q |
887 |
tgctatgctgtctctttcattaaaccat |
914 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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|
| T |
49129703 |
tgctatgctgtatctttcattaaaccat |
49129730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 509 - 610
Target Start/End: Original strand, 52246131 - 52246229
Alignment:
| Q |
509 |
gttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgtcctatggtctcgatctagcttg |
608 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| |||||| || |||| | | ||||||| | ||||||||| |
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|
| T |
52246131 |
gttagggggttggatttt-ggctttttcagaagtt-gttattttacgtctaatattaatgtcgagctttaggctatatac-atggtcttggtctagcttg |
52246227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 401 - 610
Target Start/End: Original strand, 41415325 - 41415532
Alignment:
| Q |
401 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctt |
500 |
Q |
| |
|
|||||||||||||||||| | || |||||||| ||||||||| |||||||||||||| |||| || ||||| | ||| ||||| |||| |||||||||| |
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|
| T |
41415325 |
actagtttcttggaaacaaccacatgagaatgtgatcaaacttaatgtggatgggagctctaatggtaacc-aggtcattctgcttatggtggtcttcta |
41415423 |
T |
|
| Q |
501 |
aaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgtcctatggtctcgat |
600 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||| || || ||||| ||||||||||||||| ||||||||| |||| ||| |||||||||| |
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|
| T |
41415424 |
tggaattcgtcaaggggttggatttttggcttttctggaag-ttatggttttaagtctaatattaatgtcgagcttcaggctatatcccatggtctcgaa |
41415522 |
T |
|
| Q |
601 |
ctagcttgga |
610 |
Q |
| |
|
|||||||||| |
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|
| T |
41415523 |
ctagcttgga |
41415532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 519
Target Start/End: Complemental strand, 9852430 - 9852372
Alignment:
| Q |
461 |
tattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggtt |
519 |
Q |
| |
|
||||| ||| |||| |||||||| |||| |||||||||||||||||| ||||||||||| |
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|
| T |
9852430 |
tattggtaatctaaatcgttctggttatggtggtcttcttaaaaatttgttagggggtt |
9852372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 826
Target Start/End: Original strand, 41415560 - 41415750
Alignment:
| Q |
629 |
aatttgattttctctcagcgataaaattcatcaaaagagagagttccgcat---catccatatgctgcgattgttaattacattagatccatgctgacta |
725 |
Q |
| |
|
||||||||| |||||| | | |||||||||||||| ||| ||||| |||| || |||||| || ||||||| |||||||||||||| | ||||||| |
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|
| T |
41415560 |
aatttgattctctctccgtgctaaaattcatcaaa-gagggagttttgcatacccactcatatgttgtgattgttgattacattagatccctactgacta |
41415658 |
T |
|
| Q |
726 |
agaactgaaacattgttcttgtgcacaccttacgagaaggcgagaaggaaactcttgtgccgactgatttgccaaatttagagctgctcttgataatgag |
825 |
Q |
| |
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| ||| |||||| ||||||| |||| ||| || ||||||||||| |||| ||| || |||||||||||||||||||||||||||||| |
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|
| T |
41415659 |
gggactacaacattattcttgttcacatcttgcg---------gaaggaaactcctgtgtcgatcagttggccaaatttagagctgctcttgataatgag |
41415749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 396 - 610
Target Start/End: Complemental strand, 39125663 - 39125450
Alignment:
| Q |
396 |
tccctactagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtc |
495 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||||| ||||||||||||||| |||||||| |||||| |||| | ||||||||| |||| | ||| |
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|
| T |
39125663 |
tcccgactagtttcttagaaacacccacctgagaatatgatcaaactcaatgtagatgggagttctattagtaactcaggtcgttctggttatggcagtc |
39125564 |
T |
|
| Q |
496 |
ttcttaaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgtcctatggtc |
595 |
Q |
| |
|
|||||| ||||||| | ||| |||||| |||| | |||||| || ||||| |||||| ||||||||||||||||||| ||| || || ||| |||||| |
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|
| T |
39125563 |
ttcttaggaattcgtcaagggattggatatttgac-ttttccgaacgttgtggttttacatctaatattaatgttgagcatcaaaccatatcccatggtc |
39125465 |
T |
|
| Q |
596 |
tcgatctagcttgga |
610 |
Q |
| |
|
| ||||||| ||||| |
|
|
| T |
39125464 |
ttgatctagtttgga |
39125450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 39147260 - 39147329
Alignment:
| Q |
401 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataac |
470 |
Q |
| |
|
||||||| |||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||| |
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|
| T |
39147260 |
actagttccttggaaacacccacatgagaatgtgatcaaaatcaatgtggatgagagctctattggtaac |
39147329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 435 - 597
Target Start/End: Original strand, 38607621 - 38607782
Alignment:
| Q |
435 |
atcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggttggatttttggctttt |
534 |
Q |
| |
|
||||||||||| ||||||| ||| |||||| ||||| | |||||||| ||| |||||||||||| ||||| | | ||||||| ||| | ||||| |
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|
| T |
38607621 |
atcaaactcaacgtggatgtgagctctatttgtaacccatatcgttctggctatggtggtcttcttaggaattcatcaaggggttgattttctacctttt |
38607720 |
T |
|
| Q |
535 |
tccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgtcctatggtctc |
597 |
Q |
| |
|
| |||| ||||| |||| ||||||||||||||| |||||||| |||| || ||||||||| |
|
|
| T |
38607721 |
ttgaaag-ttgtggttttgtgtctaatattaatgtcgagcttcaagctatatcttatggtctc |
38607782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 501
Target Start/End: Complemental strand, 29978964 - 29978866
Alignment:
| Q |
403 |
tagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctta |
501 |
Q |
| |
|
||||||||||||||| || || | ||| || || |||||||||||| ||||||| ||||||| ||||| |||||||||| |||| |||||||||||| |
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|
| T |
29978964 |
tagtttcttggaaactcccacataagattgtgaagaaactcaatgtgcatgggagctctattggtaaccctagtcgttctggttatggtggtcttctta |
29978866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Complemental strand, 40636114 - 40636012
Alignment:
| Q |
436 |
tcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggg---gttggatttttggctt |
532 |
Q |
| |
|
||||| |||||||||||| ||| | ||||| |||| || ||| || || ||||||| ||||||||| |||||||||||||| | |||||||||||||| |
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|
| T |
40636114 |
tcaaaatcaatgtggatgagagctttattggtaacatatgtccttttggttattgtagtcttcttagaaattcgttaggggggtggtggatttttggctt |
40636015 |
T |
|
| Q |
533 |
ttt |
535 |
Q |
| |
|
||| |
|
|
| T |
40636014 |
ttt |
40636012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 683 - 765
Target Start/End: Original strand, 33280933 - 33281015
Alignment:
| Q |
683 |
ccatatgctgcgattgttaattacattagatccatgctgactaagaactgaaacattgttcttgtgcacaccttacgagaagg |
765 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || |||| | | |||||||||||||||| || |||||||| || ||||| |
|
|
| T |
33280933 |
ccatatgtagcgattgttgattacattagatcgttgttgacaagggactgaaacattgttctcgttcacaccttgcgcgaagg |
33281015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 838
Target Start/End: Original strand, 76798 - 76867
Alignment:
| Q |
769 |
gaaggaaactcttgtgccgactgatttgccaaatttagagctgctcttgataatgagaataaacttttta |
838 |
Q |
| |
|
||||||||| |||| ||| ||||||| | ||||||| |||| ||||||||||||||| || |||||||| |
|
|
| T |
76798 |
gaaggaaacacttgcgcctactgattggtcaaatttgaagctactcttgataatgagattagacttttta |
76867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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