View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4960-Insertion-3 (Length: 555)

Name: NF4960-Insertion-3
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4960-Insertion-3
NF4960-Insertion-3
[»] chr6 (3 HSPs)
chr6 (142-295)||(12797934-12798086)
chr6 (142-295)||(22495230-22495381)
chr6 (406-459)||(22495114-22495167)
[»] chr2 (3 HSPs)
chr2 (8-137)||(23394440-23394569)
chr2 (188-249)||(10375776-10375837)
chr2 (199-243)||(25291570-25291614)
[»] chr4 (3 HSPs)
chr4 (192-252)||(51466116-51466176)
chr4 (188-249)||(21191541-21191602)
chr4 (199-243)||(43523913-43523957)
[»] chr8 (1 HSPs)
chr8 (188-249)||(11630076-11630137)
[»] chr1 (2 HSPs)
chr1 (205-243)||(44520847-44520885)
chr1 (187-233)||(35363562-35363607)
[»] chr5 (1 HSPs)
chr5 (183-243)||(11888891-11888952)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 12797934 - 12798086
Alignment:
Q  142 agtgatagacaaaccgccttatgtggcatactaccatttcatacacccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttg 241  Q
    ||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12797934 agtgatagacaaaccaccttatgtggc-taccaccattccatacacccccatgtggcagggacaattttgtccattaacaaaaaataagggataaatttg 12798032  T
Q  242 tcatacaacatcttatcaccctcttcctctctcttctctatcctcggtcatttt 295  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  12798033 tcatacaatatcttatcaccctcttcctctctcttctctatccgcggtcatttt 12798086  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 142 - 295
Target Start/End: Complemental strand, 22495381 - 22495230
Alignment:
Q  142 agtgatagacaaaccgccttatgtggcatactaccatttcatacacccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttg 241  Q
    ||||||||||||||| ||||||||||| ||| |||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  22495381 agtgatagacaaaccaccttatgtggc-taccaccattccatacacccccacgtggaaaggacaattttgtccattaacaaaaaataagggataaatttg 22495283  T
Q  242 tcatacaacatcttatcaccctcttcctctctcttctctatcctcggtcatttt 295  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  22495282 tcatacaatatcttatca-cctcttcctctctcttctctatcctcggtcatttt 22495230  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 22495167 - 22495114
Alignment:
Q  406 cacccccacacaccacctctcaccgccaactgtgccgcctatcaccgccgttca 459  Q
    |||| ||||||||||||||||||||||  |||  ||||||||||| ||||||||    
T  22495167 caccaccacacaccacctctcaccgccgcctgcaccgcctatcactgccgttca 22495114  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 23394440 - 23394569
Alignment:
Q  8 aagtattgttggatccacttaagaatgagatgcttaagtgaaaccctgagttttttaaaacccctnnnnnnnttctctccattgaagtacctattaaata 107  Q
    ||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  23394440 aagtattgttggatccacttaagaatgggatgcttaaatgagatcctgagttttttaaaacccctaaaaaatttctctccattgaagtacctattaaata 23394539  T
Q  108 ctgggtcttaatggttaagaccttaaaaat 137  Q
      || ||||||||||||||||||| |||||    
T  23394540 tcggatcttaatggttaagaccttgaaaat 23394569  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 10375776 - 10375837
Alignment:
Q  188 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 249  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  10375776 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 10375837  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 25291614 - 25291570
Alignment:
Q  199 agggacaattttgtccattaacaaaaaataagggataaatttgtc 243  Q
    |||| |||||||||||||| |||||||| ||||| ||||||||||    
T  25291614 aggggcaattttgtccattcacaaaaaagaagggttaaatttgtc 25291570  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 51466176 - 51466116
Alignment:
Q  192 atgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaacat 252  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  51466176 atgtggtagggacaattttatccattaataaaaaataagggataaatttgtcatacaacat 51466116  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 21191541 - 21191602
Alignment:
Q  188 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 249  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21191541 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 21191602  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 43523913 - 43523957
Alignment:
Q  199 agggacaattttgtccattaacaaaaaataagggataaatttgtc 243  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||    
T  43523913 aggggcaattttgtccattaacaaaaaacaagggataattttgtc 43523957  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 11630076 - 11630137
Alignment:
Q  188 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 249  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11630076 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 11630137  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 44520885 - 44520847
Alignment:
Q  205 aattttgtccattaacaaaaaataagggataaatttgtc 243  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  44520885 aattttgtccattaacaaaaaataagggataattttgtc 44520847  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 35363607 - 35363562
Alignment:
Q  187 cccccatgtggtagggacaattttgtccattaacaaaaaataaggga 233  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  35363607 cccccatgtggcaggg-caattttgtccattaacaaaaaacaaggga 35363562  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 11888952 - 11888891
Alignment:
Q  183 tacacccccatgtggta-gggacaattttgtccattaacaaaaaataagggataaatttgtc 243  Q
    ||||||||||||||  | ||| |||||||||||||||||||||||||| |||||| ||||||    
T  11888952 tacacccccatgtgacaaggggcaattttgtccattaacaaaaaataatggataattttgtc 11888891  T

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