View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4960-Insertion-4 (Length: 457)

Name: NF4960-Insertion-4
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4960-Insertion-4
NF4960-Insertion-4
[»] chr7 (2 HSPs)
chr7 (8-457)||(32895508-32895940)
chr7 (71-118)||(32892503-32892550)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 32895508 - 32895940
Alignment:
Q  8 aatttaactgaaaagagtcgagtaatttgaatccactcatatttacttttcagcactgcttggttaaagctatctttccaccaccataagataaacagaa 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  32895508 aatttaactgaaaagagtcgagtaatttgaattcactcatatttacttttcaacactgcctggttaaagctatctttccaccaccataagataaacagaa 32895607  T
Q  108 aaaagcatgaatgatagctttgtttcttatgtcaagttgtcaaatatataaagaattatgtttcagctcataatagaacatgtttcattaagcacaatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32895608 aaaagcatgaatgatagctttgtttcttatgtcaagttgtcaaatatatcaagcattatgtttcagctcataatagaacatgtttcattaagcacaatat 32895707  T
Q  208 aaattttgaaattgttaatgttaaattattgtgttattcattagtgcataaaactaactttgatatcaaattattgtgaagatgtcacattcttcggatc 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895708 aaatttagaaattgttaatgttaaattattgtgttattcattagtgcataaaactaactttgatatcaaattattgtgaagatgtcacattcttcggatc 32895807  T
Q  308 tattgtagcctgtaggtgcattttaggatgcaaccatcacaagacctaaaattagctatgcagtaaataaagcctgtcagttctgtcgatattggattat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||    
T  32895808 tattgtagcctgtaggtgcattttaggatgcaaccatcacaagacctaaaattagctatgcagtaaataaagcc-----------------ttggattat 32895890  T
Q  408 aacaacaacattttaatctttaccaagtccatcaagaatggcttccaacc 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895891 aacaacaacattttaatctttaccaagtccatcaagaatggcttccaacc 32895940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 32892503 - 32892550
Alignment:
Q  71 ttaaagctatctttccaccaccataagataaacagaaaaaagcatgaa 118  Q
    ||||||||||||| || |||||| ||| ||||||||||||||||||||    
T  32892503 ttaaagctatcttccccccaccagaagttaaacagaaaaaagcatgaa 32892550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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