View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4960-Insertion-5 (Length: 317)
Name: NF4960-Insertion-5
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4960-Insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 5279468 - 5279193
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5279468 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
5279369 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5279368 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctca |
5279269 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5279268 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattc |
5279193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 5287195 - 5286941
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
5287195 |
agttttgcagtgagcgatgaaggtggaaattggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttc |
5287096 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
| |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5287095 |
tggatgaagcaacagcatccattgactctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctca |
5286996 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5286995 |
cagagttccaactgtaatagacagtgacatggtcatggtcctatcttatggtatg |
5286941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 5316627 - 5316902
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| || || || ||||| |||| |
|
|
| T |
5316627 |
agttttgcagtgagtgatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttc |
5316726 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
| |||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
5316727 |
tggatgaagctactgcctccattgactctgccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctca |
5316826 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattc |
282 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316827 |
cagaattccaactgtaatagatagtgacatggtcatggtcttatcttatggtatgcttaatccttattcttcattc |
5316902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 15128611 - 15128882
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| || ||| | |||||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
15128611 |
agttatgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttt |
15128710 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
| |||||||| || ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
15128711 |
tggatgaagctactgcatccattgattcagccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctca |
15128810 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||| | | |||||||||||| |
|
|
| T |
15128811 |
cagagttccaactgtaatagacagtgacatggtcatggttctatcttatggtatgttaattccttattcttc |
15128882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 5309979 - 5310250
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
5309979 |
agttttgcagtgagtgatgaaggtggaaattggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttc |
5310078 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
| |||||||| || || || |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5310079 |
tggatgaagctactgcctctattgactcttccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctca |
5310178 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttc |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | |||||||||||| |
|
|
| T |
5310179 |
cagagttccaactgtcatagacagtgacatggtcatggtcctatcttatggtatgttatttccttattcttc |
5310250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 14946469 - 14946202
Alignment:
| Q |
7 |
agttttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||||| || || | |||||||||| |
|
|
| T |
14946469 |
agttttgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttt |
14946370 |
T |
|
| Q |
107 |
tagatgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctca |
206 |
Q |
| |
|
| || ||||| || ||||||||||| |||||||||||||| |||||||||||| |||| |||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
14946369 |
tggacgaagctactgcatccattgattcagccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctca |
14946270 |
T |
|
| Q |
207 |
cagagttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttatt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | |||||||| |
|
|
| T |
14946269 |
cagagttccaactgtaatagacagtgacatggtcatggtcctatcttatggtatgttaattccttatt |
14946202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 5348146 - 5347921
Alignment:
| Q |
14 |
cagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctagatga |
113 |
Q |
| |
|
|||||||| ||||||| | |||||||||| | || || | ||| ||||||||||||||||||| || ||||||||||||| |||||| ||| | ||||| |
|
|
| T |
5348146 |
cagtgagtaatgaaggggaaaattggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatga |
5348047 |
T |
|
| Q |
114 |
agcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctcacagagtt |
213 |
Q |
| |
|
||| || || || ||||| || ||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
5348046 |
agctactgcctctattgattctgccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagtt |
5347947 |
T |
|
| Q |
214 |
ccaactgtaatagacagtgacatggt |
239 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
5347946 |
ccaactgttattgacagtgatatggt |
5347921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 31523634 - 31523367
Alignment:
| Q |
10 |
tttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| || || || | |||| | ||||||| |
|
|
| T |
31523634 |
tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag |
31523535 |
T |
|
| Q |
110 |
atgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcaaagaatgcacagttataactgtggctcacag |
209 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||| | |||||||| |
|
|
| T |
31523534 |
atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag |
31523435 |
T |
|
| Q |
210 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattctt |
277 |
Q |
| |
|
| |||||||||||||||||||||||||||| || || |||||||||||||| | | ||||||||||| |
|
|
| T |
31523434 |
aattccaactgtaatagacagtgacatggtcatgatcctatcttatggtatgttgattccttattctt |
31523367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University