View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4960-Insertion-6 (Length: 417)
Name: NF4960-Insertion-6
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4960-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 16728746 - 16728463
Alignment:
| Q |
8 |
aaatgtaatctgttgataagtctttggtttgcatggttcatgggaaaattaaatatgattatgtttaattagagattattagataacttgtttgaaaaat |
107 |
Q |
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| T |
16728746 |
aaatgtaatttgttgataagtctttggtttgcatggttcatgggaaaattaaatatgattatgtttaattagagattattagataacttgtttgaaaaat |
16728647 |
T |
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| Q |
108 |
cacaagnnnnnnnngataacttgcttgagttgttaactaa--gcaattaatatttttt-gaaaagtaatagcaattaatctgttaaacaaaaatttgatt |
204 |
Q |
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| T |
16728646 |
cacaagaaaaaaa-gataacttgtttgagttgttaactaatagcaattaatatttttttgaaaagtaatagcaattaatctgttaaacaaaaatttgatt |
16728548 |
T |
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| Q |
205 |
agcttgataagatataattaatctactgactcnnnnnnnggatataattaatctattttctagatcttaataaatttgtgaaaat |
289 |
Q |
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| T |
16728547 |
agcttgataagatataattaatctacttactcaaaaaaaggatataattaatctattttctagatcttaataaatttgtgaaaat |
16728463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 16728408 - 16728370
Alignment:
| Q |
378 |
gttatgcaaaacacaataatgaacatggatgttctagta |
416 |
Q |
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| T |
16728408 |
gttatgcaaaacacaataatgaacatggatgttctagta |
16728370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 16728435 - 16728406
Alignment:
| Q |
319 |
atagattcacaaatcagttgaatatttgtt |
348 |
Q |
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| T |
16728435 |
atagattcacaaatcagttgaatatttgtt |
16728406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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