View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4960-Insertion-7 (Length: 202)
Name: NF4960-Insertion-7
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4960-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 20210702 - 20210885
Alignment:
| Q |
8 |
tggaattgatgtagaagggtttgggatgttacttcctttgatttatattgacaattgtctaaccaagtggttgaagcgttggacttacgagattaataac |
107 |
Q |
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| T |
20210702 |
tggaattgatgtagaagggtttgggatgttacttcctttgatttatattgacaattgtctaaccaagtggttggagcgttggacttacgtgattaatgac |
20210801 |
T |
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| Q |
108 |
gaatcgttgaaagaactcaattgtaaactctaacaaacggaaatgttgtttacagcgaattttttcttcaagaaagcatcacga |
191 |
Q |
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| T |
20210802 |
gaatcgttgtaagaactcaattctaaattctaataaacggaaatgttgtttacagcgaattttttcttcgagaaagcatcacga |
20210885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 5623703 - 5623757
Alignment:
| Q |
147 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctatacca |
202 |
Q |
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| T |
5623703 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctatacca |
5623757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 21168990 - 21169044
Alignment:
| Q |
147 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctatacca |
202 |
Q |
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| T |
21168990 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctatacca |
21169044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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