View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4960-Insertion-8 (Length: 160)

Name: NF4960-Insertion-8
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4960-Insertion-8
NF4960-Insertion-8
[»] chr4 (5 HSPs)
chr4 (8-157)||(20355058-20355207)
chr4 (60-110)||(27360262-27360312)
chr4 (60-120)||(51700319-51700378)
chr4 (78-119)||(5351016-5351057)
chr4 (60-116)||(52311278-52311334)
[»] chr7 (3 HSPs)
chr7 (9-116)||(7578549-7578662)
chr7 (13-108)||(35339023-35339124)
chr7 (74-118)||(48143675-48143718)
[»] chr5 (8 HSPs)
chr5 (9-119)||(35105043-35105159)
chr5 (60-119)||(29948458-29948517)
chr5 (60-116)||(16633321-16633377)
chr5 (68-108)||(24228338-24228377)
chr5 (68-109)||(24213344-24213384)
chr5 (74-118)||(25214463-25214506)
chr5 (74-118)||(25278613-25278656)
chr5 (60-119)||(35074167-35074225)
[»] chr2 (5 HSPs)
chr2 (60-116)||(21289652-21289707)
chr2 (60-110)||(21294956-21295005)
chr2 (68-119)||(45276428-45276478)
chr2 (124-157)||(7384798-7384831)
chr2 (60-109)||(19912349-19912397)
[»] chr1 (5 HSPs)
chr1 (60-116)||(27417452-27417508)
chr1 (60-116)||(11444079-11444134)
chr1 (60-107)||(18640556-18640602)
chr1 (60-120)||(28201688-28201747)
chr1 (124-159)||(36686799-36686834)
[»] chr8 (4 HSPs)
chr8 (60-109)||(44711349-44711398)
chr8 (60-103)||(12145704-12145747)
chr8 (60-156)||(28621807-28621909)
chr8 (74-118)||(28350612-28350655)
[»] chr3 (4 HSPs)
chr3 (67-112)||(21587185-21587229)
chr3 (60-109)||(44126784-44126832)
chr3 (70-118)||(13100788-13100835)
chr3 (60-109)||(44122054-44122102)
[»] chr6 (1 HSPs)
chr6 (68-109)||(19441194-19441234)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 5e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 20355207 - 20355058
Alignment:
Q  8 tatccttagttttccaccttccaatagcttctataagtgaatggatgattagttaattactttgatcattcacttgctcatattgtatcctataaatagg 107  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  20355207 tatccttagttttccaccttccaataacttctataagtgaatagatgattagttaattactttgatcattcagttgttcatattgtatcctataaatagg 20355108  T
Q  108 actcatattttaacatttgagaagcaatacaatatactcttttattctct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20355107 actcatattttaacatttgagaagcaatacaatatactcttttattctct 20355058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 27360262 - 27360312
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggact 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27360262 ttaattactttgatcattcacttgttcatattgtatcctataaataggact 27360312  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 51700378 - 51700319
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa 120  Q
    ||||||| ||||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||    
T  51700378 ttaattattttgatcattcacatgctcat-ttgtatcatataaagaggactcatatcttaa 51700319  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 5351016 - 5351057
Alignment:
Q  78 cacttgctcatattgtatcctataaataggactcatatttta 119  Q
    ||||| ||||| |||| |||||||||||||||||||||||||    
T  5351016 cacttactcattttgtgtcctataaataggactcatatttta 5351057  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 52311334 - 52311278
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 116  Q
    |||||| ||||||||| ||||||  |||| |||| |||||||||||||| |||||||    
T  52311334 ttaatttctttgatcactcacttagtcatcttgtgtcctataaataggattcatatt 52311278  T

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Target: chr7 (Bit Score: 55; Significance: 6e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 7578549 - 7578662
Alignment:
Q  9 atccttagttttccaccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcacttgctcatattgtatcctataa 102  Q
    ||||||||| ||||||||||| |||  | | ||||||||||||||| | |||      ||||||||||||||||||||||||| ||||||||||||||||    
T  7578549 atccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttatattgtatcctataa 7578648  T
Q  103 ataggactcatatt 116  Q
    ||||||||||||||    
T  7578649 ataggactcatatt 7578662  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 35339124 - 35339023
Alignment:
Q  13 ttagttttccaccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcacttgctcatattgtatcctataaatag 106  Q
    ||||| ||||||||||| ||| || | ||||||||||||||| ||| |      |||||||||||||  ||||| |||||||||||||||||||||||||    
T  35339124 ttagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcatattgtatcctataaatag 35339025  T
Q  107 ga 108  Q
    ||    
T  35339024 ga 35339023  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 48143675 - 48143718
Alignment:
Q  74 cattcacttgctcatattgtatcctataaataggactcatatttt 118  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  48143675 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 48143718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 4e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 35105043 - 35105159
Alignment:
Q  9 atccttagttttccaccttccaatagcttctataagtgaatggatgattagt------taattactttgatcattcac-ttgctcatattgtatcctata 101  Q
    ||||||||| || |||||| ||||| || | ||||||||||||||| |||||      |||||||||||||||||||| ||||||||| ||||| |||||    
T  35105043 atccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactttgctcatactgtat-ctata 35105141  T
Q  102 aataggactcatatttta 119  Q
    ||||||||||||||||||    
T  35105142 aataggactcatatttta 35105159  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 29948517 - 29948458
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatttta 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||    
T  29948517 ttaattactttgatcattcacttgctcagattgtatcctataaataatactcgtatttta 29948458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 16633377 - 16633321
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 116  Q
    ||||||||||||||||||||||| ||||  |||| ||||||||||||| ||||||||    
T  16633377 ttaattactttgatcattcacttactcaacttgtgtcctataaatagggctcatatt 16633321  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 24228377 - 24228338
Alignment:
Q  68 tttgatcattcacttgctcatattgtatcctataaatagga 108  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  24228377 tttgatcattcacttgctca-attgtatcctataaatagga 24228338  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 24213384 - 24213344
Alignment:
Q  68 tttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  24213384 tttgatcattcacttgctcat-ttgtgtcctataaataggac 24213344  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 25214506 - 25214463
Alignment:
Q  74 cattcacttgctcatattgtatcctataaataggactcatatttt 118  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  25214506 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 25214463  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 25278656 - 25278613
Alignment:
Q  74 cattcacttgctcatattgtatcctataaataggactcatatttt 118  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  25278656 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 25278613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 35074225 - 35074167
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatttta 119  Q
    |||||| ||||||||||| | |||||||| ||||||||| |||||  |||||||||||||    
T  35074225 ttaattgctttgatcattaatttgctcat-ttgtatcctgtaaatgagactcatatttta 35074167  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 21289707 - 21289652
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 116  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  21289707 ttaattactttgatcattcacttgctcat-ttgtgtcctataaataggacttatatt 21289652  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 21295005 - 21294956
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggact 110  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  21295005 ttaatgactttgatcattcacttgctcat-ttgtatcctataaataggact 21294956  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 45276428 - 45276478
Alignment:
Q  68 tttgatcattcacttgctcatattgtatcctataaataggactcatatttta 119  Q
    ||||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  45276428 tttgaccattcacttactcat-ttgtgtcctataaataggactcatatttta 45276478  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 7384831 - 7384798
Alignment:
Q  124 ttgagaagcaatacaatatactcttttattctct 157  Q
    ||||||||||||||||||||||||| ||||||||    
T  7384831 ttgagaagcaatacaatatactcttatattctct 7384798  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 19912349 - 19912397
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    |||||| ||||||||| |||||||||||| |||| |||||||||||||||    
T  19912349 ttaattgctttgatcactcacttgctcat-ttgtgtcctataaataggac 19912397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 27417508 - 27417452
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 116  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  27417508 ttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtatt 27417452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 11444134 - 11444079
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatatt 116  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  11444134 ttaatgactttgatcattcacttgctcat-ttgtgtcctataaataggacttatatt 11444079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 18640602 - 18640556
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaatagg 107  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||    
T  18640602 ttaattgctttgatcattcacttgctcat-ttgtgtcctataaatagg 18640556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 28201747 - 28201688
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa 120  Q
    |||||| ||||||| ||||||||| |||| || | ||||||||||| ||||||||||||||    
T  28201747 ttaattgctttgataattcacttgttcat-ttatgtcctataaatatgactcatattttaa 28201688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 36686799 - 36686834
Alignment:
Q  124 ttgagaagcaatacaatatactcttttattctcttt 159  Q
    ||||||||||||||| |||||||| |||||||||||    
T  36686799 ttgagaagcaatacactatactctcttattctcttt 36686834  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 44711398 - 44711349
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||| ||||    
T  44711398 ttaattattttgatcattcatttgttcatattgtatcctataaatcggac 44711349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12145747 - 12145704
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaa 103  Q
    |||||||||||||||| |||||||||||| |||| |||||||||    
T  12145747 ttaattactttgatcactcacttgctcattttgtgtcctataaa 12145704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 28621807 - 28621909
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggactcatattttaa----------catttgagaagcaatacaatatactcttt 149  Q
    ||||||||||| ||||||||||||||||||||||| | |||| |    |||||||||||||          ||||||||||||||| ||||||||||| |    
T  28621807 ttaattactttaatcattcacttgctcatattgtaacttataga----actcatattttaatgtaaagacacatttgagaagcaatgcaatatactctat 28621902  T
Q  150 tattctc 156  Q
    |||||||    
T  28621903 tattctc 28621909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 28350655 - 28350612
Alignment:
Q  74 cattcacttgctcatattgtatcctataaataggactcatatttt 118  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  28350655 cattcacttgcttat-ttgtatcctataaataggactcatgtttt 28350612  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 21587229 - 21587185
Alignment:
Q  67 ctttgatcattcacttgctcatattgtatcctataaataggactca 112  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  21587229 ctttgatcattcacttgctcat-ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 44126832 - 44126784
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  44126832 ttaatgactttgatcattcacttgctcat-ttgtgtcctataaataggac 44126784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 13100788 - 13100835
Alignment:
Q  70 tgatcattcacttgctcatattgtatcctataaataggactcatatttt 118  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  13100788 tgatcattcacttgcttat-ttgtatcctataaataggactcatgtttt 13100835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 44122102 - 44122054
Alignment:
Q  60 ttaattactttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    ||||| ||||||||||||||| ||||||| |||| |||||||||||||||    
T  44122102 ttaatgactttgatcattcacctgctcat-ttgtgtcctataaataggac 44122054  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 19441234 - 19441194
Alignment:
Q  68 tttgatcattcacttgctcatattgtatcctataaataggac 109  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  19441234 tttgatcattcacttgctcat-ttgtgtcctataaataggac 19441194  T

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