View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4960_low_2 (Length: 561)
Name: NF4960_low_2
Description: NF4960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4960_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 42223886 - 42224420
Alignment:
| Q |
8 |
agattattcttactgagatacaaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223886 |
agattattcttactgagatacaaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaa |
42223985 |
T |
|
| Q |
108 |
gatgtgatgaattggatatggaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223986 |
gatgtgatgaattggatatggaactagggattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttg |
42224085 |
T |
|
| Q |
208 |
tggcaactcgcctgatagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224086 |
tggcaactcgcctgatagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctct |
42224185 |
T |
|
| Q |
308 |
gagagttgaagtcttgaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224186 |
gagagttgaagtcttgaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataaga |
42224285 |
T |
|
| Q |
408 |
gattgccaaaggttgaaggaattttaccagtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgtacc |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42224286 |
gattgccaaaggttgaaggaatttgacctgtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgtgcc |
42224385 |
T |
|
| Q |
508 |
attgagatcgttcatagctaattgaatgacattga |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224386 |
attgagatcgttcatagctaattgaatgacattga |
42224420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 28 - 542
Target Start/End: Original strand, 42211690 - 42212204
Alignment:
| Q |
28 |
caaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaagatgtgatgaattggatatg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211690 |
caaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaagatgtgatgaattggatatg |
42211789 |
T |
|
| Q |
128 |
gaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttgtggcaactcgcctgatagat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211790 |
gaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttgtggcaactcgcctgatagat |
42211889 |
T |
|
| Q |
228 |
tgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaag |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211890 |
tgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaag |
42211989 |
T |
|
| Q |
328 |
attgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaagga |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211990 |
attgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaagga |
42212089 |
T |
|
| Q |
428 |
attttaccagtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgtaccattgagatcgttcatagcta |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42212090 |
attttaccagtgagattattgacagaaaagtctaaactttgtagattatggagttgacccaattgtggtggaagtgtgccattgagatcgttcatagcta |
42212189 |
T |
|
| Q |
528 |
attgaatgacattga |
542 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42212190 |
attgaatgacattga |
42212204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University