View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4961-Insertion-1 (Length: 588)
Name: NF4961-Insertion-1
Description: NF4961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4961-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 39256154 - 39256292
Alignment:
| Q |
404 |
tttgtaatctgaaaagcacccgccggcgaagacatcgatggttgtttgt---tgtcgtcgctagtgagtgaagaaattaaagaattaccagcacaagagt |
500 |
Q |
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| T |
39256154 |
tttgtaatctgaaaagcacccgccggagacgacatcgacggttgtttgttgttgtcgtcgccagtgagtgaagaaatgaaagaattaccagcagaagagt |
39256253 |
T |
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| Q |
501 |
aagaaaaattaagagtttttgaagaatcatttctcttga |
539 |
Q |
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| T |
39256254 |
atgaaaaattaagagtttttgaagaatcatttctcttga |
39256292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 406
Target Start/End: Original strand, 39255963 - 39256100
Alignment:
| Q |
271 |
aataaagggttatgattcttttgaagaaagttttggtaaaatatgaagatttcacacacnnnnnnnnggaacaatgacaactgctagaagaactaccaca |
370 |
Q |
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| T |
39255963 |
aataaagggttatgattcttttgaagaaagtttaggtgaaatatgaagatttcacatacctttttttggaacaatgacaacggctagaagaactaccaca |
39256062 |
T |
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| Q |
371 |
cttaccagaaccc--agttccagagctacacttccttt |
406 |
Q |
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| T |
39256063 |
ctttccagaacccaaagtttcagagctacacttccttt |
39256100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 2533690 - 2533825
Alignment:
| Q |
125 |
tttatcatcatgaccagcaaagtcataaccttcagccttcttaacagatttctttttgtcaggaaagccttgggagttcaaatccctactgttgtcaaga |
224 |
Q |
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| T |
2533690 |
tttatcatcatgagcagcaaagtcataagcttcagtcttcttaacagatttctttttgtcaggaaagcgttgtgagtgcaaatccctgctgttatcaaga |
2533789 |
T |
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| Q |
225 |
tcatgttctctgtcatcgtgatcgcgcacccttcta |
260 |
Q |
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| T |
2533790 |
tcatgttctctatcatcgtgatcgcgcatccttcta |
2533825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 2551234 - 2551288
Alignment:
| Q |
154 |
cttcagccttcttaacagatttctttttgtcaggaaagccttgggagttcaaatc |
208 |
Q |
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| T |
2551234 |
cttcagccttcttaacagatttctttttgttaggagagcgtagtgagttcaaatc |
2551288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 46935591 - 46935474
Alignment:
| Q |
7 |
actttcattatatgtcatggaagtatcatcttattatcttgtaattacaactcaaatgataaaagtctacatagtgatttgatattttggggcgcgggtc |
106 |
Q |
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| T |
46935591 |
actttcattatatgtcatagaagtatcatcctattgtcctgtaattacaactcaaatgataaaagactacatagtgatttgatattctggggcgcgggtc |
46935492 |
T |
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| Q |
107 |
caaacatgcaactcgcca |
124 |
Q |
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| T |
46935491 |
cggacctgcaattcgcca |
46935474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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