View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4961-Insertion-2 (Length: 547)
Name: NF4961-Insertion-2
Description: NF4961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4961-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Complemental strand, 6709907 - 6709368
Alignment:
| Q |
8 |
caacatatcattggggttaacaagttaaacaaaataaccggtacaaattcttctcaaagaatgacaggtgaagggaaagtaaactagttgtatatggacc |
107 |
Q |
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| T |
6709907 |
caacatactattggggttaacaagttaaacgaaataaccggtacaaattcttctcaaagaatgataggtgaagggaaagtaaactagttgtatatggacc |
6709808 |
T |
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| Q |
108 |
tcatcctcagtaaaacgtcctgctctgctgattctgtcaaacatttctcctccagatgcatattccattacaatggccagatgagtaggtgttaaaatga |
207 |
Q |
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| T |
6709807 |
tcatcctcagtaaaacgtcctgctctgctgattctgtcaaacatttctcctccagatgcatattccattacaatggccagatgagtaggtgttaaaatga |
6709708 |
T |
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| Q |
208 |
cctaagtgaaatttcacagaacattttccgtaaatataaatatcctcctttccacataaaggatttagaaacataataaaaataccaacctccttaaacc |
307 |
Q |
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| T |
6709707 |
cctaagtgaaatttcacagaacattttccgtaaatataaatatcctcctttccacataaaggatttagaaacataataaaaataccaacctccttaaacc |
6709608 |
T |
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| Q |
308 |
tgacaatattaggatgtctcaaagacctatgattgattatttctctcttaacattttcatcaatctgccatacacacacaataacatgattcgaggaaaa |
407 |
Q |
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| T |
6709607 |
tgacaatattaggatgtctcaaagacctatgattgattatttctctcttaacattttcatcaatctgccatacacacacaataacatgattcgaggaaaa |
6709508 |
T |
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| Q |
408 |
atgagtctcacactctatcagtaaaaattataaagaaactagcaacaaatattccttaacgattaaaatattcaagaaaaaatgagtctcacactaaaag |
507 |
Q |
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| T |
6709507 |
atgagtctcacactctatcagtaaaaattataaagaaactagcaacaaatattccttaacgattaaaatattcaagaaaaaatgagtctcacactaaaag |
6709408 |
T |
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| Q |
508 |
ttcaattaaaagatcatacttaaaccaaaagtacagtttg |
547 |
Q |
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| T |
6709407 |
ttcaattaaaagatcatacttaaaccaaaagtacagtttg |
6709368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 34129452 - 34129536
Alignment:
| Q |
289 |
ataccaacctccttaaacctgacaatattaggatgtctcaaagacctatgattgattatttctctcttaacattttcatcaatct |
373 |
Q |
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| T |
34129452 |
atactaacctccttaaacctaacaatgttaggatgtctcagagacctgtgattaataatttctctcttcacattttcatcaatct |
34129536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 34129308 - 34129394
Alignment:
| Q |
135 |
ctgattctgtcaaacatttctcctccagatgcatattccattacaatggccagatgagtaggtgttaaaatgacctaagtgaaattt |
221 |
Q |
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| T |
34129308 |
ctgattcgctcaaaaagttctcctccagatgcatactccattacaatagcaagatgagtaggtgttaaaatgacctgagtaaaattt |
34129394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 34077584 - 34077504
Alignment:
| Q |
294 |
aacctccttaaacctgacaatattaggatgtctcaaagacctatgattgattatttctctcttaacattttcatcaatctg |
374 |
Q |
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| T |
34077584 |
aacctccttgaacctgacaatattgggatgcctcaatgatctatggtttataatttctctctgtacattttcatcaatctg |
34077504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 12309347 - 12309267
Alignment:
| Q |
294 |
aacctccttaaacctgacaatattaggatgtctcaaagacctatgattgattatttctctcttaacattttcatcaatctg |
374 |
Q |
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| T |
12309347 |
aacctccttgaacctgacaatattgggatgcctcagtgatctatgatttataatttccctttgtacattttcatctatctg |
12309267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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