View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4961_low_2 (Length: 362)
Name: NF4961_low_2
Description: NF4961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4961_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 6709902 - 6710248
Alignment:
| Q |
17 |
atgttgcaggctcgtttcttctttcaacagctgatatccggtgtcagctattgtcattcaatggtaatcgagctcctctcccttccccactatctatgaa |
116 |
Q |
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| T |
6709902 |
atgttgcaggctcgtttcttctttcaacagctgatatccggtgtcagctattgtcattcaatggtaatcgagctcctctcccttccccactatctatgaa |
6710001 |
T |
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| Q |
117 |
ttgtgtttaaactacct-agaatgtggtatagttaatgtactaatgtaccaattttattagtattatgtctgatgcatcaatcttatgtataatttgtct |
215 |
Q |
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| T |
6710002 |
ttgtgtttaaactatcttagaatgtggtatagttaatgtactaatgtaccaattttattagtattatgtctgatgcatcaatcttatgtataatttgtct |
6710101 |
T |
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| Q |
216 |
cctcatgaagcaagtgtgtcatcgggatctgaagttggaaaacactttgttggatggagatccagcacttcatttgaagatctgtgattttggatactcc |
315 |
Q |
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| T |
6710102 |
cctcatgaagcaagtatgtcatcgggatctgaagttggaaaacactttgttggatggagatccagcacttcatttgaagatctgtgattttggatactcc |
6710201 |
T |
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| Q |
316 |
aaggtaagggcttatttgcttataaagatttctgttgtttgagttct |
362 |
Q |
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| T |
6710202 |
aaggtaagggcttatttgcttataaagatttctgttgtttgagttct |
6710248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 34129026 - 34128876
Alignment:
| Q |
177 |
tattatgtctgatgcatca-----atcttatgtataatttgtctcctcatgaagcaagtgtgtcatcgggatctgaagttggaaaacactttgttggatg |
271 |
Q |
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| T |
34129026 |
tattatgcctgatgcatcagtcttatcttatgtgtaatgtgtctcttcatgaagcaagtatgtcaccgggacctgaaattggaaaatactttgttggatg |
34128927 |
T |
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| Q |
272 |
gagatccagcacttcatttgaagatctgtgattttggatactccaaggtaa |
322 |
Q |
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| T |
34128926 |
gaagcccgactcctcgactgaagatatgtgattttggttactccaaggtaa |
34128876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 34129182 - 34129114
Alignment:
| Q |
16 |
catgttgcaggctcgtttcttctttcaacagctgatatccggtgtcagctattgtcattcaatggtaat |
84 |
Q |
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| T |
34129182 |
catgatgcaggctcgtttcttctttcaacagctcatatctggggtcagctactgtcatgcaatggtaat |
34129114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 41126045 - 41126092
Alignment:
| Q |
35 |
ttctttcaacagctgatatccggtgtcagctattgtcattcaatggta |
82 |
Q |
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| T |
41126045 |
ttcttccaacagctaatatccggtgttagctactgtcattcaatggta |
41126092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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