View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4962-Insertion-1 (Length: 1008)
Name: NF4962-Insertion-1
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4962-Insertion-1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 514 - 1008
Target Start/End: Complemental strand, 3630597 - 3630084
Alignment:
| Q |
514 |
ttaatttaatttccctaataggcgtaaatcaccgtgcgttaatt------------acttttgactattttaacgactttttcgcatttaggcgcaaatc |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630597 |
ttaatttaatttccctaataggcgtaaatcaccgtgcgttaattcaacaatatgtaacttttgactattttaacgactttttcgcatttaggcgcaaatc |
3630498 |
T |
|
| Q |
602 |
ctcaagtcttggaccatttagtgggtttaatatgatggcatgacattattaagctttgattatctcaagataattgtctgcttctaatggaactcaagga |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630497 |
ctcaagtcttggaccatttagtgggtttaatatgatggcatgacattattaagctttgattatctcaagataattgtctgcttctaatggaactcaagga |
3630398 |
T |
|
| Q |
702 |
ggcgttccataacatgattatt--attcggctnnnnnnnnnnnnttatagtcctactagtggaagaaaatctgtcgtgtttatagtttaaatttcagtgc |
799 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630397 |
ggcgttccataacatgattattaaattcggctaaaaaacaaaaattatagtcctactagtggaagaaaatctgtcgtgtttatagtttaaatttcagtgc |
3630298 |
T |
|
| Q |
800 |
ttttttagatgctttctccctcccaactctgtgccaggtttccattctctttcaattcttctattccccacaccacactgttcatattacaaactcccat |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630297 |
ttttttagatgctttctccctcccaactctgtgccaggtttccattctctttcaattcttctattccccacaccacactgttcatattacaaactcccat |
3630198 |
T |
|
| Q |
900 |
gatgttaca-nnnnnnnnnnnnnnnnaaaattctagctacctatagctgtaacattttgcacctatgtctagtaattaaaaaa----tatattttcaaaa |
994 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3630197 |
gatgttacatatttttttttctttttaaaattctatctacctatagctgtaacgttttgcccttatgtctagtaattaaaaaatacgtatattttcaaaa |
3630098 |
T |
|
| Q |
995 |
taaagaaaggaaaa |
1008 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
3630097 |
taaagaaagaaaaa |
3630084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 56633 - 56715
Alignment:
| Q |
432 |
gtggattaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatcct |
514 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
56633 |
gtggattaagtaatccacttgtccttattttattggaaaacagttccaacagcacctagggaactgtttctaagttttctcct |
56715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 432 - 505
Target Start/End: Complemental strand, 56097 - 56024
Alignment:
| Q |
432 |
gtggattaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataag |
505 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||| ||||| |||||||| || |||| ||||| |||| |
|
|
| T |
56097 |
gtggattaagtaatccacttgtccttattttattggagaagagttctaacagcacctaaggaattgtttctaag |
56024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 10429003 - 10428918
Alignment:
| Q |
432 |
gtggattaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatccttaa |
517 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10429003 |
gtggaataagtaatccacttgtctcaattttattggaaaacagttaaaacagcacctagggaactgtttataagttttatccttaa |
10428918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 10429652 - 10429739
Alignment:
| Q |
436 |
attaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatccttaatttaat |
523 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||| |
|
|
| T |
10429652 |
attaagaaatccacttgtcacaaatttattggagaacagtaccaacagcacatagggaactgcatctaagttttgtcctttatttaat |
10429739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 432 - 518
Target Start/End: Complemental strand, 16152018 - 16151932
Alignment:
| Q |
432 |
gtggattaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatccttaat |
518 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16152018 |
gtggaataagtaatccacttgtctcaattttattggaaaacagttaaaacagcacctagggaactgtttataagttttatccataat |
16151932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 16152665 - 16152743
Alignment:
| Q |
436 |
attaagtaatccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatcct |
514 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
16152665 |
attaagaaatccacttgtcacaaatttattggagaacagtaccaacagcacatagggaactgcatctaagttttgtcct |
16152743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 446 - 515
Target Start/End: Original strand, 17050724 - 17050793
Alignment:
| Q |
446 |
ccacttggcataattttattggagaacagttccaacagcacatagggaactgtttataagttttatcctt |
515 |
Q |
| |
|
||||||| ||| |||||||| | |||||||||||||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
17050724 |
ccacttgtcatcgttttattgaaaaacagttccaacagcacatatggaactgtgtataagttttctcctt |
17050793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University