View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4962-Insertion-4 (Length: 621)
Name: NF4962-Insertion-4
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4962-Insertion-4 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 172571 - 171965
Alignment:
| Q |
8 |
gctgagatataatat-ccttagtgaaacgatacctcggaaaaatcaaaagctcaatcagcacgaacatgcatgggtaaacatgaatcatgttaccaacaa |
106 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
172571 |
gctgagatataatatacctcagtgaaacgatacctcggaaaaatcaaaagctcaatcggcacgaacaggcatgggtaaacatgaatcatgttaacaacaa |
172472 |
T |
|
| Q |
107 |
tggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattaagaaaatactcatgatattacaaatcctaaggtaagagtatgaaacct |
206 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
172471 |
tggagaagcggatgaaatctcagcaagatcaccgtgaatgcgggatgaattaagaaaatactcatgatattacaaatcctaaggtaagagtacgaaacct |
172372 |
T |
|
| Q |
207 |
actcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagataaagaccataaacaaagtctgacatgaatcatcacatgcaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
172371 |
actcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaa |
172272 |
T |
|
| Q |
307 |
ggggtgtgtaaaggaaaagtttctagaaggaaaatgttgctcttctcttaaagccgcaccaaacgaagcttgattagaagatatataacaggtcttcatc |
406 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172271 |
cgggtgtgtaaaggaaacgtttctagaaggaaaatgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatc |
172172 |
T |
|
| Q |
407 |
ttcacattaaaaacattttgtatatgtaaattaagttcaaaattcaaactcatgcaaacatgttcatataattctctctttctctgaaattccattgaat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
172171 |
ttcacattaaaaacattttgtatatgtaaattaagttcaaaattcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaat |
172072 |
T |
|
| Q |
507 |
tattagtacatatttcatctgtatccaattgtcatacacatacatttaattaaactctacacttctacagcttcatctgtacttttagaattaccgcaaa |
606 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
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| T |
172071 |
tattagtacatatttcatccgtatccaattgtcacacacattcatttaattaaactctacacttct--------atctgtactcttagaattatcgcaaa |
171980 |
T |
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| Q |
607 |
agatatgaatttcta |
621 |
Q |
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|||||||| |||||| |
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| T |
171979 |
agatatgagtttcta |
171965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 97 - 584
Target Start/End: Original strand, 31044909 - 31045378
Alignment:
| Q |
97 |
ttaccaacaatggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattaagaaaatactcatgatattacaaatcctaaggtaagag |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||| |
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| T |
31044909 |
ttaccaacaatggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattgagaaaatactcatgatactacaaaccctatggtaagag |
31045008 |
T |
|
| Q |
197 |
tatgaaacctactcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagataaagaccataaacaaagtctgacatgaatca |
296 |
Q |
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|| |||||||||||||||||| ||||||| || ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
31045009 |
tacgaaacctactcgttttgcgttcaaaatcaa---aactgacatgaactataagcaaagagctcagataaagaccataaac--agtctgacatgaatca |
31045103 |
T |
|
| Q |
297 |
tcacatgcaaggggtgtgtaaaggaaaagtttctagaaggaaaatgttgctcttctcttaaagccgcaccaaacgaagcttgattagaagatatataaca |
396 |
Q |
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|| ||||||| ||| | | | | || | || |||||||| |||||| ||||| ||||||| |||||||||||||||| | |||||||| |
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| T |
31045104 |
tctcatgcaa--ggtattca---gcagtgtatgta-aaggaaaa-gttgctattctcctaaagcctcaccaaacgaagcttg------cggcatataaca |
31045190 |
T |
|
| Q |
397 |
ggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaattcaaactcatgcaaacatgttcatataattctctctttctctgaaa |
495 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
31045191 |
agtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatataaccctctctttctctaaaa |
31045290 |
T |
|
| Q |
496 |
ttccattgaattattagtacatatttcatctgtatccaattgtcatacacatacatttaattaaactctacacttctacagcttcatct |
584 |
Q |
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|||||||||||||| ||||||||||| ||| |||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||||| |
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| T |
31045291 |
ttccattgaattatgagtacatattttatccgtatccaattgtcaca-acatacatttaatttaactctagacttctacaacttcatct |
31045378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 31044862 - 31044909
Alignment:
| Q |
27 |
agtgaaacgatacctcggaaaaatcaaaagctcaatcagcacgaacat |
74 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
31044862 |
agtgaaacgaaacctcagaaaaatcaaaagctcaatcagcacgaacat |
31044909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 102 - 255
Target Start/End: Complemental strand, 18416 - 18257
Alignment:
| Q |
102 |
aacaatggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattaagaaaatactcatgatattacaaatcctaaggtaagagtatga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||| ||| |||||| || |
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| T |
18416 |
aacaatggagaagcagatgaaatctcagcaagatcactttgaatgcagaatgaattgagaaaatactcatgatattgcaaaccctttggttagagtacga |
18317 |
T |
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| Q |
202 |
aacctactcgttttgct------ctcaaaataaatattactgacatgaattataagcaaa |
255 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
18316 |
aacctactcgttttgctttcaaaatcaaaataaatattactgacatgaacaataagcaaa |
18257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 18469 - 18421
Alignment:
| Q |
27 |
agtgaaacgatacctcggaaaaatcaaaagctcaatcagcacgaacatg |
75 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18469 |
agtgaaacgaaacctcggaaaaatcaaaagctcaatcagcacgaacatg |
18421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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