View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4962-Insertion-5 (Length: 462)
Name: NF4962-Insertion-5
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4962-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 27877277 - 27876976
Alignment:
| Q |
8 |
tggtataactttaaattttatacattatgcctatataatttgtacactacatcgacatatagacaaatatattgacaagaatatgaaaaataaaaatata |
107 |
Q |
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| T |
27877277 |
tggtataactttaaattttatacattatgtctatataatttgtacacaacatcgtcatatagacaaatatatttacaagaatatgaaaaataaaaatata |
27877178 |
T |
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| Q |
108 |
gagttagattaactagttaactatttggtattaccaaatagttaacctaagagag--gccataattagatatttgaagaaccgttatgctgtcacgaaag |
205 |
Q |
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| T |
27877177 |
gagttagattaactagttaactatttggtattaccaaatagttaatctaagagagatgtcacaattagatatttgaagaactgttatgctgccacggaag |
27877078 |
T |
|
| Q |
206 |
agctcttcattaaggttgtgtctagggctacgaaaaagaag--------gttttttcaggttcataatattcgatccaaaaataaaccgtcatattgatt |
297 |
Q |
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| T |
27877077 |
agcccttcattaaggtggtgtttagggctacgaaaaagaagaaatataaggtttttcaaattcataatattcgatccaagaatagaccatcatattgatt |
27876978 |
T |
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| Q |
298 |
ca |
299 |
Q |
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| T |
27876977 |
ca |
27876976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 10681606 - 10681517
Alignment:
| Q |
157 |
agagaggccataattagatatttgaagaaccgttatgctgtcacgaaagagctcttcattaaggttgtgtctagggctacgaaaaagaag |
246 |
Q |
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| T |
10681606 |
agagaggcgacaatcagatatttgaagaaccgttctgctgccacgaaagagcccttcactgaggtggtgtctagggccacgaaaaagaag |
10681517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 10895246 - 10895157
Alignment:
| Q |
157 |
agagaggccataattagatatttgaagaaccgttatgctgtcacgaaagagctcttcattaaggttgtgtctagggctacgaaaaagaag |
246 |
Q |
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| T |
10895246 |
agagaggcgacaatcagatatttgaagaaccgttctgctgccacgaaagagcccttcactgaggtggtgtctagggccacgaaaaagaag |
10895157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10716880 - 10716806
Alignment:
| Q |
172 |
agatatttgaagaaccgttatgctgtcacgaaagagctcttcattaaggttgtgtctagggctacgaaaaagaag |
246 |
Q |
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| T |
10716880 |
agatatttgaagaaccgttctgctgccacgaaagagcacttcactgaggtggtgtctagagccacgaaaaagaag |
10716806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 10930650 - 10930576
Alignment:
| Q |
172 |
agatatttgaagaaccgttatgctgtcacgaaagagctcttcattaaggttgtgtctagggctacgaaaaagaag |
246 |
Q |
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| T |
10930650 |
agatatttgaagaaccgttctgctgccacgaaagagcacttcactgaggtggtgtctagagccacgaaaaagaag |
10930576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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