View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4962-Insertion-6 (Length: 435)

Name: NF4962-Insertion-6
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4962-Insertion-6
NF4962-Insertion-6
[»] chr6 (1 HSPs)
chr6 (11-435)||(23505534-23505958)
[»] chr1 (2 HSPs)
chr1 (28-148)||(7382202-7382330)
chr1 (80-144)||(52127253-52127318)
[»] chr8 (1 HSPs)
chr8 (28-143)||(32134190-32134312)
[»] chr2 (6 HSPs)
chr2 (45-140)||(10004820-10004914)
chr2 (42-80)||(45154883-45154921)
chr2 (80-141)||(4634497-4634558)
chr2 (80-145)||(16239030-16239095)
chr2 (343-432)||(16766710-16766799)
chr2 (181-249)||(41001915-41001984)
[»] chr3 (2 HSPs)
chr3 (323-434)||(17796375-17796486)
chr3 (323-434)||(19104815-19104926)
[»] chr4 (1 HSPs)
chr4 (30-88)||(47645824-47645882)
[»] chr7 (1 HSPs)
chr7 (346-434)||(24725520-24725608)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 23505958 - 23505534
Alignment:
Q  11 cttttaagggtacatgcaagaaaattaaatgtagaaatatagtattggaaattatgtatttaacatctaaaaagtttattttctcaatgcatgatttaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23505958 cttttaagggtacatgcaagaaaattaaatgtagaaatatagtattggaaattatgtatttaacatctaaaaagtttattttctcaatgcatgatttaat 23505859  T
Q  111 tttgatttccttttttagttcttaacttgtgccctaagggctagaggacaagttagcatgaccctctatttatttatagaacggggtcacggatacaaac 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23505858 tttgattttcttttttagttcttaacttgtgccctaagggctagaggacaagttagcatgaccctctatttatttatagaacggggtcacggatacaaac 23505759  T
Q  211 cgggacaattgacgaaccagttcaaaattgacccgtatcnnnnnnntggacaaaatatttcaaaatcctttgaaattttgcatgaatttcaagattttgt 310  Q
    |||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23505758 cgggacaattgatgaaccagttcaaaattgacccgtatcaaaaaaatggacaaaatatttcaaaatcctttgaaattttgcatgaatttcaagattttgg 23505659  T
Q  311 gttattttaatgtgataggattttatctactctaggattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgagattt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23505658 gttattttaatgtgataggattttatctactctaggattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgggattt 23505559  T
Q  411 aactcaccattttgacaacaatgag 435  Q
    |||||||||||||||||||||||||    
T  23505558 aactcaccattttgacaacaatgag 23505534  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 7382330 - 7382202
Alignment:
Q  28 aagaaaattaaatgtagaaatatagtattggaaattatgtatttaacatctaaaaagttta--------ttttctcaatgcatgatttaattttgatttc 119  Q
    ||||||| ||||| ||| |||||||||||| ||||| || |||||||||||||||||||||        |||||| ||| ||  ||||| |||| ||||     
T  7382330 aagaaaactaaatatagtaatatagtattgaaaattgtgcatttaacatctaaaaagtttaaaagtttattttctaaatacaaaatttatttttcatttt 7382231  T
Q  120 cttttttagttcttaacttgtgccctaag 148  Q
    |||||||||||||||||||||||||||||    
T  7382230 cttttttagttcttaacttgtgccctaag 7382202  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 52127318 - 52127253
Alignment:
Q  80 aaaagtttattttct-caatgcatgatttaattttgatttccttttttagttcttaacttgtgccc 144  Q
    ||||||||||||| | |||||||  ||||| |||| ||||| ||||||||||||||||||||||||    
T  52127318 aaaagtttatttttttcaatgcaaaatttacttttcatttctttttttagttcttaacttgtgccc 52127253  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 32134190 - 32134312
Alignment:
Q  28 aagaaaattaaatgtagaaatatagtattggaaattatgtatttaacatctaaaaagttta--------ttttctcaatgcatgatttaattttgatttc 119  Q
    |||||||  |||| || |||||||||||| |||||| || |||||||||||||||||||||        |||||||||||||  ||||| |||| |||||    
T  32134190 aagaaaaccaaatatataaatatagtattagaaattgtgcatttaacatctaaaaagtttaaaagtatattttctcaatgcaaaattta-ttttcatttc 32134288  T
Q  120 cttttttagttcttaacttgtgcc 143  Q
    |||||||||||||||| |||||||    
T  32134289 cttttttagttcttaatttgtgcc 32134312  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 10004914 - 10004820
Alignment:
Q  45 aaatatagtattggaaattatgtatttaacatctaaaaagtttattttctcaatgcatgatttaattttgatttccttttttagttcttaacttgt 140  Q
    ||||||| ||||||||||| || ||||||||| | ||||||||||||| | ||||||  |||||||||| |||| ||||||| ||| |||||||||    
T  10004914 aaatataatattggaaattgtgcatttaacattttaaaagtttatttttttaatgcaaaatttaattttcattttctttttt-gtttttaacttgt 10004820  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 45154921 - 45154883
Alignment:
Q  42 tagaaatatagtattggaaattatgtatttaacatctaa 80  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  45154921 tagaaatatagtattggaaattatgcatttaacatctaa 45154883  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 4634497 - 4634558
Alignment:
Q  80 aaaagtttattttctcaatgcatgatttaattttgatttccttttttagttcttaacttgtg 141  Q
    |||||||||||||||||||| |  ||||| |||| ||||||| |||||||| ||||||||||    
T  4634497 aaaagtttattttctcaatggaaaatttatttttcatttcctcttttagtttttaacttgtg 4634558  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 16239095 - 16239030
Alignment:
Q  80 aaaagtttattttctcaatgcatgatttaattttgatttccttttttagttcttaacttgtgccct 145  Q
    |||||| |||||| ||||| ||  ||||| |||  |||||||||||||||||||| ||||||||||    
T  16239095 aaaagtatattttttcaatacaaaatttattttacatttccttttttagttcttagcttgtgccct 16239030  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 16766799 - 16766710
Alignment:
Q  343 taggattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgagatttaactcaccattttgacaacaat 432  Q
    |||||||||||||| ||||||| | ||  |||||||||| | ||||  |||| || ||||| |||||||| |||  ||||||||||||||    
T  16766799 taggattctgctatggatttgattcgttgaaggtgaataaaatcgtaaaatcctaaattttaagatttaagtcaaaattttgacaacaat 16766710  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 41001984 - 41001915
Alignment:
Q  181 tatttatagaacggggtcacggatacaaaccgggacaattgacgaaccagttc-aaaattgacccgtatc 249  Q
    |||||||||||  |||||| ||||||||| |||| ||||| ||||||| |||| ||||||||||| ||||    
T  41001984 tatttatagaatcgggtcatggatacaaatcgggtcaatttacgaacccgttcaaaaattgacccttatc 41001915  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 17796486 - 17796375
Alignment:
Q  323 tgataggattttatctactctaggattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgagatttaactcaccattt 422  Q
    |||||||| ||| |||| | ||||||||||||||  |||||||||||  ||| |||||| ||||||  |||| ||||||||  ||||||| ||   ||||    
T  17796486 tgataggaatttgtctattttaggattctgctatgaatttgagttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattt 17796387  T
Q  423 tgacaacaatga 434  Q
    ||||||||||||    
T  17796386 tgacaacaatga 17796375  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 19104926 - 19104815
Alignment:
Q  323 tgataggattttatctactctaggattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgagatttaactcaccattt 422  Q
    |||||||| ||| |||| | ||||||||||||||  |||||||||||  ||| |||||| ||||||  |||| ||||||||  ||||||| ||   ||||    
T  19104926 tgataggaatttgtctattttaggattctgctatgaatttgagttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattt 19104827  T
Q  423 tgacaacaatga 434  Q
    ||||||||||||    
T  19104826 tgacaacaatga 19104815  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 47645882 - 47645824
Alignment:
Q  30 gaaaattaaatgtagaaatatagtattggaaattatgtatttaacatctaaaaagttta 88  Q
    |||||||||||||| || | || ||||  ||||| ||||||||||||||||||||||||    
T  47645882 gaaaattaaatgtaaaattttaatattaaaaattgtgtatttaacatctaaaaagttta 47645824  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 24725520 - 24725608
Alignment:
Q  346 gattctgctatcgatttgagttgtgcaaggtgaatagagtcgtctaatcttagattttgagatttaactcaccattttgacaacaatga 434  Q
    |||||| |||| ||||||||||||  |||||||| | ||||||  |||||| ||||||  ||||||| ||   ||||||||||||||||    
T  24725520 gattctactatggatttgagttgttgaaggtgaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaacaatga 24725608  T

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