View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4962-Insertion-7 (Length: 210)
Name: NF4962-Insertion-7
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4962-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 31956243 - 31956035
Alignment:
| Q |
8 |
attttagcatttgaattaagtttattttnnnnnnntgtaagaagtgaacatttctataataatgaaagaaggactcaccag--------agcatgagagg |
99 |
Q |
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| T |
31956243 |
attttagcatttgaattaagtttattttaaaaaaatgtaagaagtgaacatttctataataatgaaagaaggattcaccaggcaagaagagtatgagagg |
31956144 |
T |
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| Q |
100 |
agaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtccgcttcaatcaactttttcgcttgctcaaagtattcttcc |
199 |
Q |
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| T |
31956143 |
agaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtcctcttcaatcaactctttcgcttgctcaaagtattcttcc |
31956044 |
T |
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| Q |
200 |
caaccgctc |
208 |
Q |
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||||||||| |
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| T |
31956043 |
caaccgctc |
31956035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 31941925 - 31941804
Alignment:
| Q |
87 |
agagcatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtccgcttcaatcaactttttcgcttgctc |
186 |
Q |
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| T |
31941925 |
agagcatgagaggagaattatcccactgtgaactgcactccaacggcgaaaaccaccgcggaggtccatcgtctgtttcgatcaactctttcgcttgctc |
31941826 |
T |
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| Q |
187 |
aaagtattcttcccaaccgctc |
208 |
Q |
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||||||||| | |||||||||| |
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| T |
31941825 |
aaagtattccttccaaccgctc |
31941804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 31968035 - 31967963
Alignment:
| Q |
87 |
agagcatgagaggagaattgtcccactgtgaactgcactccaacggcgaaaaccaccgtggcggtccaccgtc |
159 |
Q |
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| T |
31968035 |
agagcataagaggagaattatccaaccgcgaaccacactccgacggcgaaaaccaccgcggaggtccaccgtc |
31967963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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