View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4962_high_1 (Length: 371)
Name: NF4962_high_1
Description: NF4962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4962_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 20111446 - 20111780
Alignment:
| Q |
17 |
caccatcgtcgtcgccgtcgccgatgtaagcatatccaatcgctttgttgtcgttggtcatcgcttttctgcctctgaatcccccattcgtgttccatcg |
116 |
Q |
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| T |
20111446 |
caccatcatcgtcgccgtcgccgatgtaagaatatccaatcgctttgttttcggtggtcatcgcttttctgcctctgagtcccccgttcgtgttccatcg |
20111545 |
T |
|
| Q |
117 |
tcgtctgattttcggttcaaatgnnnnnnnnttgannnnnnnngtttctgtcatagattgactattgcaaaattgaatttcttaacctccaccagaacac |
216 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20111546 |
tcgtctgattttcggttcaaatggaaaaaaaatgaatttttttgtttctgtcatagattgagtattgcaaaattgaatttcttaacctccaccagaacac |
20111645 |
T |
|
| Q |
217 |
aaaa-acgattcaataaaagttaaaaggtaagaaattctgtcataattcttcttctctattctcaaccttgttatccataatcttgtttgttgattgcga |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |
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| T |
20111646 |
aaaaaacgattcaataaaagttaaaaggtaagaaattctgtcataattcttcttctctattctgaaccttgttatccataattttgtttgttgattacga |
20111745 |
T |
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| Q |
316 |
tgatgggggataatgaagtttaagaagaagcagca |
350 |
Q |
| |
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| T |
20111746 |
tgatgggggataatgaagtttaagaagaagcagca |
20111780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 18970201 - 18970533
Alignment:
| Q |
17 |
caccatcgtcgtcgccgtcgccgatgtaagcatatccaatcgctttgttgtcgttggtcatcgcttttctgcctctgaatcccccattcgtgttccatcg |
116 |
Q |
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| T |
18970201 |
caccatcatcgtcgccgtcgccgatgtaagcctatccaatcgctttgttttcggtggtcatcgcttttctgcctctgagtcccccgttcgtgttccatcg |
18970300 |
T |
|
| Q |
117 |
tcgtctgattttcggttcaaatgnnnnnnnnttgannnnnnnngtttctgtcatagattgactattgcaaaattgaatttcttaacctccaccagaacac |
216 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18970301 |
tcgtctgattttcggttcaaatggaaaaaaaatgaatttttttgtttctgtcatagattgagtattgcaaaattgaatttcttaacctccaccagaacac |
18970400 |
T |
|
| Q |
217 |
aaaa-acgattcaataaaagttaaaaggtaagaaattctgtcataattcttcttctctattctcaaccttgttatccataatcttgtttgttgattgcga |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
18970401 |
aaaaaacgattcaataaaagttaaaaggtaagaaattctgtcataattcttcttctctattctcaaccttgttatccataattttgtttgttgattac-- |
18970498 |
T |
|
| Q |
316 |
tgatgggggataatgaagtttaagaagaagcagca |
350 |
Q |
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| T |
18970499 |
tgatgggggataatgaagtttaagaagaagcagca |
18970533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 336
Target Start/End: Complemental strand, 12644632 - 12644333
Alignment:
| Q |
32 |
cgtcgccgatgtaagcatatccaatcgctttgttgtcgttggtcatcgcttttctgcctctgaatcccccattcgtgttccatcgtcgtctgattttcgg |
131 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |
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| T |
12644632 |
cgtcgccgatgtaagcatatccaatcgctttgttttcggtggtcatcgcttttctgcctctgaatccgccgttcgtgttccatcgtcgtctgattttctg |
12644533 |
T |
|
| Q |
132 |
ttcaaatgnnnnnnnnttga--nnnnnnnngtttctgtcatagattgactattgcaaaattgaatttcttaacctccaccagaacacaaaaacgattcaa |
229 |
Q |
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||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12644532 |
ttcgaatggaaaaaaattgaattgatttttgtttctgtcatagattgagtattgcaaaattgaatttcttaacctccaccagaagacaaaaacgattcaa |
12644433 |
T |
|
| Q |
230 |
taaaagttaaaaggtaagaaattctgtcataattcttcttctctattctcaaccttgttatccataatcttgtttgttgattgcgatgatgggggataat |
329 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
12644432 |
taaaagttaaaa------aaattctgtcataattcttcttctttattctcaaccttgttatccataattttgtttgttgattacgatgat-ggggataat |
12644340 |
T |
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