View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4963-Insertion-1 (Length: 708)
Name: NF4963-Insertion-1
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-1 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 704
Target Start/End: Original strand, 5250399 - 5251105
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5250399 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccgcagttgatattgga |
5250498 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250499 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
5250598 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250599 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
5250698 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtag |
406 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5250699 |
acatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaagctgtag |
5250798 |
T |
|
| Q |
407 |
ttggcaatctatctaagggtttccaaataactccaccttcactactag---------catgtttcaatccaagcatatccttttgctttgcaagaaattc |
497 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5250799 |
ttggaaatctatctaagggtttccaactaacgccaccttcactactagcaaaagcctcatgtttcaatccgagcatatccttttgctttgcaagaaattc |
5250898 |
T |
|
| Q |
498 |
aagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaagattgagattcagctttc |
597 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5250899 |
tagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaaggttgagattcagctttc |
5250998 |
T |
|
| Q |
598 |
agcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgc |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250999 |
agcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgc |
5251098 |
T |
|
| Q |
698 |
tttggta |
704 |
Q |
| |
|
||||||| |
|
|
| T |
5251099 |
tttggta |
5251105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Original strand, 5268286 - 5268996
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||| |||||||||| |||| || |||| ||||| |
|
|
| T |
5268286 |
agtaataagcgctcccaacattcttcactcccattccagacatcatccaaaaaaagcaagtatttcttgcctgttagtccctgctgcaactgatgttgga |
5268385 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
||| ||| || |||||| |||||| |||| ||| |||||| |||| ||||||||| || ||||| | | |||||||| |||| |||||||||||||| || |
|
|
| T |
5268386 |
gtaaattcaagtcttcaccatctgctgaaaagtcaaatgacctcagaattgctttagtaagtccgagaccatcaaaaatttccgaaacatagacccaggc |
5268485 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
|||| ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268486 |
tttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggt |
5268585 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtag |
406 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5268586 |
acatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtag |
5268685 |
T |
|
| Q |
407 |
ttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcatatccttttgctttgcaagaaattc |
497 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5268686 |
ttggcaatctatctaagggtttccaactaactccaccttcactactagcacaagcgtcttgttttaatccaagcatatgcttttgttttgcaagaaattc |
5268785 |
T |
|
| Q |
498 |
aagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaagattgagattcagctttc |
597 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
5268786 |
tagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggttgagattcaagtttc |
5268885 |
T |
|
| Q |
598 |
agcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgc |
697 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268886 |
tgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgc |
5268985 |
T |
|
| Q |
698 |
tttggtactgc |
708 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5268986 |
tttggaactgc |
5268996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Complemental strand, 4388736 - 4388032
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||||||||||||| |||||||| | |||||||||||| |||||| | ||| || ||||| ||||| |
|
|
| T |
4388736 |
agtagtaagcgctcccaaccttcctcattcccattccagacatcatctaaaacaagcaaatatttcttaccagttagtttgtgctgcaattgatgttgga |
4388637 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4388636 |
gcagattaaactcttcagcatgtgttgaagagtgaaatgacctcagaattgctttggtaagtccaacaacatcaaaagtttctgaaacgtagacccaagc |
4388537 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388536 |
tttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
4388437 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtag |
406 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
4388436 |
acttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaagatgtag |
4388337 |
T |
|
| Q |
407 |
ttggcaatc-tatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcatatccttttgctttgcaagaaatt |
496 |
Q |
| |
|
|||| |||| |||| |||||||||||| | | ||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
4388336 |
ttggaaatcttatc-aagggtttccaactgagtccaccttcactactagcacaggtgtcttgtttcagtccgagcatatccttttgcttcgcaagaaatt |
4388238 |
T |
|
| Q |
497 |
caagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaagattgagattcagcttt |
596 |
Q |
| |
|
| | |||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| || |||| ||| |
|
|
| T |
4388237 |
ctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctagtaga------aggttcaaattt |
4388144 |
T |
|
| Q |
597 |
cagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatg |
696 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4388143 |
ctgcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacggacatg |
4388044 |
T |
|
| Q |
697 |
ctttggtactgc |
708 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4388043 |
ctttggtactgc |
4388032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 692
Target Start/End: Original strand, 5298961 - 5299655
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
5298961 |
agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctgctgcaattgatgttgga |
5299060 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
||||||| || |||||| |||||| |||||||||||||| | | |||||||||||| ||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
5299061 |
gtagattcaagtcttcaccatctgccgaagagtgaaatgaccgtaaaattgctttggtaagtccaacaacattaaaagtttccgaaacatagacccaggc |
5299160 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
||| |||||||| || | ||| ||| ||| || ||||||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5299161 |
ttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggt |
5299260 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtag |
406 |
Q |
| |
|
||| ||| |||| |||||||| || |||||||| ||| ||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5299261 |
acacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtac |
5299360 |
T |
|
| Q |
407 |
ttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcatatccttttgctttgcaagaaattc |
497 |
Q |
| |
|
|||||||||| | ||| | ||||||| ||| |||||||| |||||||| ||||| || || | |||||||||||||||||| |||||||| |
|
|
| T |
5299361 |
ttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattc |
5299460 |
T |
|
| Q |
498 |
aagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaagattgagattcagctttc |
597 |
Q |
| |
|
| |||||||||||||||| | |||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
5299461 |
taacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttc |
5299560 |
T |
|
| Q |
598 |
agcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgta |
692 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| || || || || | ||||| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5299561 |
agcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgta |
5299655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 8589959 - 8590347
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
|||||||| ||||||||||||| || |||| ||||||| ||| || |||||||| | |||||||| ||||||||| | ||| || ||||| ||||| |
|
|
| T |
8589959 |
agtagtaactgctcccaacattctgcattcccgttccagatatcgtctaaaacaagcaagtatttcttgcctgttagtatgtgctgcaattgatgttgga |
8590058 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
||||||| || |||||| |||||| |||||| | |||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
8590059 |
gtagattcaagtcttcaccatctgctgaagaattaaatgaattgataattgctttggtgagtccaacaacatcaaaagattcagaaacatagacccatgc |
8590158 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
|||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | ||| ||||||||||||||||| |
|
|
| T |
8590159 |
tttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattgga |
8590258 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccac |
395 |
Q |
| |
|
|| |||||||||| || || | | |||||||| ||||||| | | ||| ||| |||||||||||||||||||| | |||||||| |
|
|
| T |
8590259 |
acgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccatatatgctcgactcatccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 94 - 395
Target Start/End: Original strand, 8454971 - 8455272
Alignment:
| Q |
94 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
193 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||| |||||| | ||| || | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8454971 |
agttgatgttggagtagatttaagtcttcaccatctgctgaagaattaaacgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaa |
8455070 |
T |
|
| Q |
194 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
293 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| |||||||| || || | ||| ||||| |
|
|
| T |
8455071 |
catagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactat |
8455170 |
T |
|
| Q |
294 |
gctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatcc |
393 |
Q |
| |
|
|||||||||||| || ||||||||||| || || | | |||||||| |||||||| | ||||| ||| |||||| ||||||||||||| | |||||| |
|
|
| T |
8455171 |
gctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcgactcatcc |
8455270 |
T |
|
| Q |
394 |
ac |
395 |
Q |
| |
|
|| |
|
|
| T |
8455271 |
ac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 94 - 381
Target Start/End: Original strand, 6947586 - 6947873
Alignment:
| Q |
94 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
193 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||| |||||| | |||||| | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6947586 |
agttgatgttggagtagattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaa |
6947685 |
T |
|
| Q |
194 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
293 |
Q |
| |
|
| |||||||| | |||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | ||||||||| |
|
|
| T |
6947686 |
cgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactat |
6947785 |
T |
|
| Q |
294 |
gctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
381 |
Q |
| |
|
|||||||||||| || |||||||||||||| || | | |||||||| |||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
6947786 |
gctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 6736230 - 6736596
Alignment:
| Q |
17 |
gctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattggagtagattgaa |
116 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||||| |||||||| | |||||||| || ||| | || ||||||| ||||||| |||| || |
|
|
| T |
6736230 |
gctcccaatattctacactcccattccagatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagttgattcaa |
6736329 |
T |
|
| Q |
117 |
ctcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttca |
216 |
Q |
| |
|
|||||| |||||| ||||| | |||||| | | |||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
6736330 |
gtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttca |
6736429 |
T |
|
| Q |
217 |
aaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgc |
316 |
Q |
| |
|
||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | |||||||||||| |||||||| || ||||||| |
|
|
| T |
6736430 |
aaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctaattattggaacctggttgc |
6736529 |
T |
|
| Q |
317 |
cactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
383 |
Q |
| |
|
||||||| || | | |||||||| ||||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
6736530 |
cactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatatgct |
6736596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 6448571 - 6448286
Alignment:
| Q |
17 |
gctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattggagtagattgaa |
116 |
Q |
| |
|
||||||||| ||| || |||| ||||||| || || |||||||||| |||||||| | ||||||| | || ||||| || |||||||||||| || |
|
|
| T |
6448571 |
gctcccaacgttctgcattcccgttccagatgtcgtctaaaacaagaaagtatttctttcttgttagtatgtgttgcagttcatgttggagtagattcaa |
6448472 |
T |
|
| Q |
117 |
ctcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttca |
216 |
Q |
| |
|
|||||| |||||| |||||| | |||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
6448471 |
gtcttcaccatctgctgaagaattaaatgactttaggattgctttggtgagtccaacaacatcaaaatattctgaaacatagacccaagatttaagttca |
6448372 |
T |
|
| Q |
217 |
aaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattat |
302 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
6448371 |
aaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 153 - 383
Target Start/End: Complemental strand, 6554091 - 6553861
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||||||||||| |
|
|
| T |
6554091 |
aattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagc |
6553992 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
352 |
Q |
| |
|
| |||||| ||||| || ||||| || || | ||||||||||||||||||||| || ||||||||| ||| || | |||||||| |||||||| | |
|
|
| T |
6553991 |
ttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatt |
6553892 |
T |
|
| Q |
353 |
cctccttgtcaccatctctaccatatatgct |
383 |
Q |
| |
|
||||| ||| |||| |||||||||||||| |
|
|
| T |
6553891 |
tttccttatcaacatccctaccatatatgct |
6553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 8568747 - 8568338
Alignment:
| Q |
7 |
agtagtaagcgctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattgga |
106 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||||||| |||||| | |||||| | | | || || ||||||| | |||| |||||| ||| || |
|
|
| T |
8568747 |
agtagtaactgctcccaaaattcctcattcccattccagatatcatctagaacaagcaaaaactttttgcctgttaatatctgttgtagttgacatttga |
8568648 |
T |
|
| Q |
107 |
gtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagc |
206 |
Q |
| |
|
|| ||| || |||||| | || | ||| || |||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8568647 |
gtggatccaagtcttcaccgtcagatgaggaatgaaatgacctgagaattgttttggtgagtccaacaacatcaaaagattctgaaacatggacccaagc |
8568548 |
T |
|
| Q |
207 |
tttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggt |
306 |
Q |
| |
|
|||||||||||| |||| || ||| ||||||| ||||| ||||| ||||||| |||||||||||||| ||||| |||||||| || || |||| |
|
|
| T |
8568547 |
tttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttattacgctc |
8568448 |
T |
|
| Q |
307 |
acatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtag |
406 |
Q |
| |
|
||||||||||||| || |||| | || ||| ||||||||| | | || ||| |||||||||||||||||| |||||||||||||||| | || |
|
|
| T |
8568447 |
acatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaagacgcag |
8568348 |
T |
|
| Q |
407 |
ttggcaatct |
416 |
Q |
| |
|
|||||||||| |
|
|
| T |
8568347 |
ttggcaatct |
8568338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 153 - 383
Target Start/End: Complemental strand, 6479635 - 6479405
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||| ||| ||| || ||||||||||||| |
|
|
| T |
6479635 |
aattgctttggtgagtccaacaacatcataagattctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagc |
6479536 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
352 |
Q |
| |
|
| |||||| ||||| || ||||| || || | ||| |||||||||||||| || || ||| | |||||||| || | | |||||||| ||||| | | |
|
|
| T |
6479535 |
ttagcaagggtggttttccccatccctcctaaaccaactatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagtt |
6479436 |
T |
|
| Q |
353 |
cctccttgtcaccatctctaccatatatgct |
383 |
Q |
| |
|
| ||||||||| ||||||| ||||||||||| |
|
|
| T |
6479435 |
cttccttgtcaacatctctgccatatatgct |
6479405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 153 - 321
Target Start/End: Complemental strand, 6519815 - 6519647
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| || || ||| ||| ||||| ||| | |
|
|
| T |
6519815 |
aattgctttggtgagtccaacatcatcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgt |
6519716 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactg |
321 |
Q |
| |
|
|||||||| ||||| ||||||||||| || | ||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
6519715 |
tgagcaagggtggttttacccattcctcctaaacccactatgctgattattggaacctggttaccactg |
6519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 6721695 - 6721467
Alignment:
| Q |
174 |
aacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttaccc |
273 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| | |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| |
|
|
| T |
6721695 |
aacatcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacct |
6721596 |
T |
|
| Q |
274 |
attccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctac |
373 |
Q |
| |
|
|| ||| ||||||||||| |||||||| || || |||||| ||||||| | ||||| || || |||||||||| || || || ||| |||| || |
|
|
| T |
6721595 |
atcccaatcagacccactatactgattatgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctctcgac |
6721496 |
T |
|
| Q |
374 |
catatatgctcaattcatccaccaaagat |
402 |
Q |
| |
|
|||||||| | ||||||||||||||||| |
|
|
| T |
6721495 |
catatatgaccgattcatccaccaaagat |
6721467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 459 - 638
Target Start/End: Complemental strand, 6448120 - 6447941
Alignment:
| Q |
459 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
558 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||||| | || || |||| |||||| ||| | |||||||| ||||||||||| | | || || || |||| |
|
|
| T |
6448120 |
tttcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaag |
6448021 |
T |
|
| Q |
559 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacag |
638 |
Q |
| |
|
| ||| | ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6448020 |
ttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaacag |
6447941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 171 - 381
Target Start/End: Complemental strand, 6590963 - 6590753
Alignment:
| Q |
171 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
270 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| | ||||| || |||||| |
|
|
| T |
6590963 |
aacaagatcaaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtctta |
6590864 |
T |
|
| Q |
271 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctc |
370 |
Q |
| |
|
||||| ||| | ||||||||| | |||||| |||||||||||| ||||| |||| || |||||||| || |||| ||||| || ||| |||| |
|
|
| T |
6590863 |
cccatcccaatcatacccactatacagattatgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctc |
6590764 |
T |
|
| Q |
371 |
taccatatatg |
381 |
Q |
| |
|
||||||||||| |
|
|
| T |
6590763 |
taccatatatg |
6590753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 159 - 416
Target Start/End: Original strand, 8471943 - 8472200
Alignment:
| Q |
159 |
tttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagca |
258 |
Q |
| |
|
|||||| ||| ||| |||||||||| || || |||| ||||||| ||||||||||||| |||| | |||||| ||||| ||||| |||||||||||| |
|
|
| T |
8471943 |
tttggtaagtgcaataacatcaaaatactcagatacatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagca |
8472042 |
T |
|
| Q |
259 |
agagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctcct |
358 |
Q |
| |
|
|| |||||||| ||||| ||| | ||||||||||||||| ||| ||| ||||||||| |||| ||| ||| || ||| | |||||||| || || | |
|
|
| T |
8472043 |
agggtggtcttccccatcccaggcaaacccactatgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctt |
8472142 |
T |
|
| Q |
359 |
tgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttggcaatct |
416 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
8472143 |
tgtcaccttctctaccacgtatggaagattcatccactaaagatgcagttggcgatct |
8472200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 7750403 - 7750559
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| |
|
|
| T |
7750403 |
aattgcttgggtgagatgaacaagatcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagt |
7750502 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtaca |
309 |
Q |
| |
|
| |||| || ||||||||||| ||| | ||||||||| |||||||| |||||| |
|
|
| T |
7750503 |
cgggcaatggttgtcttacccatcccaatcacacccactatactgattatgggtaca |
7750559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 158 - 301
Target Start/End: Original strand, 5281065 - 5281208
Alignment:
| Q |
158 |
ctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagc |
257 |
Q |
| |
|
||||||| | || |||| |||||||| ||||||||||||||||||||||||| ||||||||||||| | || || | |||||| |||||||||| ||| |
|
|
| T |
5281065 |
ctttggtaattcgaacagcatcaaaaaattctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagc |
5281164 |
T |
|
| Q |
258 |
aagagtggtcttacccattccaccgagacccactatgctgatta |
301 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
5281165 |
aagggtggtcttacccatcccaccagaacccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 13270215 - 13270086
Alignment:
| Q |
179 |
caaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcc |
278 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccc |
13270116 |
T |
|
| Q |
279 |
accgagacccactatgctgattattggtac |
308 |
Q |
| |
|
||||||||||| |||||||| ||||| |
|
|
| T |
13270115 |
catcagacccactatactgattatgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 171 - 356
Target Start/End: Original strand, 6882926 - 6883111
Alignment:
| Q |
171 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
270 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| || ||||| |||||| |
|
|
| T |
6882926 |
aacaagattaaaagattctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtctta |
6883025 |
T |
|
| Q |
271 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctc |
356 |
Q |
| |
|
||||| || ||||||||||| || ||||| ||| || ||||| |||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
6883026 |
cccatccccatcagacccactatactaattatgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctc |
6883111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 6266122 - 6266249
Alignment:
| Q |
180 |
aaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcca |
279 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | |||||||| || || |
|
|
| T |
6266122 |
aaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatcccc |
6266221 |
T |
|
| Q |
280 |
ccgagacccactatgctgattattggta |
307 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
6266222 |
gtcagacccactatactgattatgggta |
6266249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 585 - 708
Target Start/End: Original strand, 5281471 - 5281594
Alignment:
| Q |
585 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
684 |
Q |
| |
|
||||||| |||||||||| |||||| |||| ||||| ||||||||||| || | ||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5281471 |
agattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttc |
5281570 |
T |
|
| Q |
685 |
ttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
|| || || |||||| ||||||| |
|
|
| T |
5281571 |
tttacatatgtgcttttgtactgc |
5281594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 190 - 381
Target Start/End: Original strand, 6259595 - 6259786
Alignment:
| Q |
190 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
289 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||| || ||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagaccca |
6259694 |
T |
|
| Q |
290 |
ctatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
381 |
Q |
| |
|
|||| |||||||| | ||| ||||| | ||| |||| || |||||||| ||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6259695 |
ctatactgattatggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg |
6259786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 171 - 323
Target Start/End: Original strand, 6900510 - 6900662
Alignment:
| Q |
171 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
270 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||||||||| ||||||||||||| ||| ||| ||| | ||| |||||||| || || || |||||| |
|
|
| T |
6900510 |
aacaagatcaaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtctta |
6900609 |
T |
|
| Q |
271 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtc |
323 |
Q |
| |
|
||||| ||| | |||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
6900610 |
cccatcccaatcacacccactacactgattatgggtacttggttgcgactgtc |
6900662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 689
Target Start/End: Original strand, 6948089 - 6948193
Alignment:
| Q |
585 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
684 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| | ||||||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6948089 |
agattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttc |
6948188 |
T |
|
| Q |
685 |
ttcac |
689 |
Q |
| |
|
||||| |
|
|
| T |
6948189 |
ttcac |
6948193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 410
Target Start/End: Complemental strand, 6838548 - 6838297
Alignment:
| Q |
159 |
tttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagca |
258 |
Q |
| |
|
|||||| ||||||| |||||||||| | || |||| |||||||||||||| ||||| | ||| || || ||| || ||||| |||||||||||| |
|
|
| T |
6838548 |
tttggtaagtccaataacatcaaaatacttagatacatggacccaagctttaatctcaaacttctcttgtattctgcaatcattgtagacaagctgagca |
6838449 |
T |
|
| Q |
259 |
agagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctcct |
358 |
Q |
| |
|
|| |||||||| ||||| ||||| | ||| ||||||||||| ||| ||| ||||||||| |||| ||| |||||| ||| | || |||| || || | |
|
|
| T |
6838448 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaatagttaattatttcttctt |
6838349 |
T |
|
| Q |
359 |
tgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttgg |
410 |
Q |
| |
|
| ||||| ||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
6838348 |
tttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttgg |
6838297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 6917502 - 6917657
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||| ||||||| ||| |||||||||||||||||| | ||||||| |||| | || || ||||| ||||| |
|
|
| T |
6917502 |
aattgatttggtgagaccaacaagatcaaaagattctgaatcatggacccaagctttaagttccacatgctccatcatcttatgatcattgtaaacaagt |
6917601 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtac |
308 |
Q |
| |
|
|| ||||| || || ||||| || ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
6917602 |
tgcgcaagggtcgtattacctatcccaataagaccaactatactgattatgggtac |
6917657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 308
Target Start/End: Original strand, 6142696 - 6142842
Alignment:
| Q |
162 |
ggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaaga |
261 |
Q |
| |
|
|||||| | ||||| |||||||| | || ||||| ||||||||| ||||||||||| |||||||| ||||||||||| ||||| | || ||| ||||| |
|
|
| T |
6142696 |
ggtgagactaacaagatcaaaagatcttggaacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagg |
6142795 |
T |
|
| Q |
262 |
gtggtcttacccattccaccgagacccactatgctgattattggtac |
308 |
Q |
| |
|
|| |||||||| || ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
6142796 |
gttgtcttacctatcccaggaagacctactatactgattatgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 708
Target Start/End: Complemental strand, 6553620 - 6553524
Alignment:
| Q |
612 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| ||||||| || ||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
6553620 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgc |
6553524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 708
Target Start/End: Original strand, 8455501 - 8455597
Alignment:
| Q |
612 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| | ||||| || |||||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
8455501 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgc |
8455597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 708
Target Start/End: Complemental strand, 6479191 - 6479068
Alignment:
| Q |
585 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
684 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| | ||||||||||| || ||||| | ||||| || ||||||||| | ||||||||||||| |
|
|
| T |
6479191 |
agattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttc |
6479092 |
T |
|
| Q |
685 |
ttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||| || ||| ||||||||||| |
|
|
| T |
6479091 |
ttcacatatatgatttggtactgc |
6479068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 708
Target Start/End: Original strand, 8590549 - 8590672
Alignment:
| Q |
585 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
684 |
Q |
| |
|
||||| |||||||||||| || || ||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||||||||| |
|
|
| T |
8590549 |
agatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttc |
8590648 |
T |
|
| Q |
685 |
ttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||| || ||||| |||||||| |
|
|
| T |
8590649 |
ttcacatatttgcttcggtactgc |
8590672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 708
Target Start/End: Complemental strand, 6519344 - 6519248
Alignment:
| Q |
612 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
6519344 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgc |
6519248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 6838222 - 6838145
Alignment:
| Q |
476 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaa |
553 |
Q |
| |
|
||||||||| ||||||| ||| ||||| ||||||| ||| | |||||||| |||||||||||||||| || ||||| |
|
|
| T |
6838222 |
ccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaa |
6838145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 660 - 708
Target Start/End: Original strand, 6736885 - 6736933
Alignment:
| Q |
660 |
atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
6736885 |
atgtttaagttcatcaagccacttcttcacatatttgttttggtactgc |
6736933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 7266 - 6960
Alignment:
| Q |
17 |
gctcccaacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctgccacagttgatattggagtagattgaa |
116 |
Q |
| |
|
|||||||| |||| |||||||||||||| | |||||| |||||||| | |||||||| || ||| | || ||||||| ||||||| |||| || |
|
|
| T |
7266 |
gctcccaatattctacactcccattccatatatcatctaaaacaagcaagtatttctttcccattaacatgtgttggagttgatgttggagttgattcaa |
7167 |
T |
|
| Q |
117 |
ctcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttca |
216 |
Q |
| |
|
|||||| |||||| ||||| | |||||| | | |||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7166 |
gtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttca |
7067 |
T |
|
| Q |
217 |
aaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgc |
316 |
Q |
| |
|
||||||| || ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | ||||||||||||||||||||| || ||||||| |
|
|
| T |
7066 |
aaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacctggttgc |
6967 |
T |
|
| Q |
317 |
cactgtc |
323 |
Q |
| |
|
||||||| |
|
|
| T |
6966 |
cactgtc |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 708
Target Start/End: Complemental strand, 6659 - 6563
Alignment:
| Q |
612 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgc |
708 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| ||||||| || ||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
6659 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgc |
6563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 153 - 416
Target Start/End: Complemental strand, 6572951 - 6572688
Alignment:
| Q |
153 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
252 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | || ||| |||| ||||||||||||||| ||||| || | || |||||| ||||| ||||| |||||| |
|
|
| T |
6572951 |
aattgttttggtgagtccaacagcatcaaatgattttgagacatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagc |
6572852 |
T |
|
| Q |
253 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
352 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| | |||||||||||||||||||| ||| |||||| | ||||| ||| || || ||| ||||||| | |
|
|
| T |
6572851 |
tgagcaagggtggtcttccccatcccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattattt |
6572752 |
T |
|
| Q |
353 |
cctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttggcaatct |
416 |
Q |
| |
|
| || || ||||| |||||||||||||||| ||| |||||||| ||||| ||||||| |||| |
|
|
| T |
6572751 |
cttctttctcaccctctctaccatatatgcaagatttatccaccagagatgcagttggcgatct |
6572688 |
T |
|
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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 35140017 - 35139943
Alignment:
| Q |
177 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaag |
251 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| |||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
35140017 |
atcaaaagattcagaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaag |
35139943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 707
Target Start/End: Complemental strand, 41068463 - 41068416
Alignment:
| Q |
660 |
atgtttaagatcatcaagccacttcttcacgtacatgctttggtactg |
707 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
41068463 |
atgtttaagttcatcaagccaattcttcacatatatgctttggtactg |
41068416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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