View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-10 (Length: 291)
Name: NF4963-Insertion-10
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-10 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 1316474 - 1316634
Alignment:
| Q |
131 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccgggcactctatcactcctagttgttatatttggaagcctattttcataa |
230 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccaggcactctatcactcctagttgttatatttggaagcctattttcataa |
1316573 |
T |
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| Q |
231 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcttctt |
291 |
Q |
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| T |
1316574 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcgtctt |
1316634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 1316308 - 1316434
Alignment:
| Q |
8 |
ttcttgaagaggtcgaaaaagtaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattt |
107 |
Q |
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| T |
1316308 |
ttcttgaagaggtcgaaaaagtaatgaacgagttcaaaaggactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgcaattt |
1316407 |
T |
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| Q |
108 |
tacataaacatattgtccagagcctaa |
134 |
Q |
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| T |
1316408 |
tacataaacatattgtccagagcctaa |
1316434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 43486621 - 43486765
Alignment:
| Q |
149 |
actagtttttccagcattatctccctgcctcccgggc--actctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
246 |
Q |
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| T |
43486621 |
actagtttttccagcattatctccctgcctcctggtcccactctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
43486720 |
T |
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| Q |
247 |
atgcctccatggtatatgccaaatcctaatccagtttttcttctt |
291 |
Q |
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| T |
43486721 |
atgccttcatggtatatgccaaatcctaatccaattttttttctt |
43486765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 43486463 - 43486549
Alignment:
| Q |
48 |
gactattgaagcaattaatgtatttgagttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
134 |
Q |
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| T |
43486463 |
gactattgaagcaattaatgtatttgacttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 43483835 - 43483871
Alignment:
| Q |
8 |
ttcttgaagaggtcgaaaaagtaatgaacgagttcaa |
44 |
Q |
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| T |
43483835 |
ttcttgaagaggtcgaaaaagtaatgaatgagttcaa |
43483871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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