View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4963-Insertion-12 (Length: 335)
Name: NF4963-Insertion-12
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-12 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 20433845 - 20433970
Alignment:
| Q |
210 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20433845 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcactgtttccacaatccaa |
20433944 |
T |
|
| Q |
310 |
aaatccccttcaacccaatccctagc |
335 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
20433945 |
aaatccccctcaacccaatccctagc |
20433970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 20433638 - 20433753
Alignment:
| Q |
7 |
agtaatatgacccacaatatctcatattaatgt---ttcctctctcccaagttaannnnnnn-aacctctctgccaagtaaacaataaatctccctacta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20433638 |
agtaatatgacccacaatatctcatattaatgtaatttcctctctcccaagttaattttttttaacctctctcccaagtaaacaataaatctccctacta |
20433737 |
T |
|
| Q |
103 |
taaattctctccatct |
118 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20433738 |
taaattctctccatct |
20433753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 5329735 - 5329860
Alignment:
| Q |
210 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5329735 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacacctacatcaaacggcactgtttccacaatccaa |
5329834 |
T |
|
| Q |
310 |
aaatccccttcaacccaatccctagc |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5329835 |
aaatccccttcaacccaatccctagc |
5329860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 5329530 - 5329641
Alignment:
| Q |
7 |
agtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaannnnnnnaacctctctgccaagtaaacaataaatctccctactataaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329530 |
agtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaatttttttaacctctctgccaagtaaacaataaatctccctactataaa |
5329629 |
T |
|
| Q |
107 |
ttctctccatct |
118 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5329630 |
ttctctcaatct |
5329641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University