View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-14 (Length: 218)
Name: NF4963-Insertion-14
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 46766443 - 46766654
Alignment:
| Q |
7 |
ataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaa |
106 |
Q |
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| T |
46766443 |
ataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaa |
46766542 |
T |
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| Q |
107 |
tttgaaaggcaacataaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattg |
206 |
Q |
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| T |
46766543 |
tttgaaaggcaacataaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattg |
46766642 |
T |
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| Q |
207 |
tcattagaatta |
218 |
Q |
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|||||||||||| |
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| T |
46766643 |
tcattagaatta |
46766654 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 37273195 - 37273137
Alignment:
| Q |
6 |
cataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagttt |
64 |
Q |
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| T |
37273195 |
cataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagttt |
37273137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 33533548 - 33533593
Alignment:
| Q |
6 |
cataagttgcttttaacttatttccattagctctccaagattgctt |
51 |
Q |
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| T |
33533548 |
cataagttgttttcaacttatttccataagctctccaagatagctt |
33533593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 16867800 - 16867755
Alignment:
| Q |
6 |
cataagttgcttttaacttatttccattagctctccaagattgctt |
51 |
Q |
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| T |
16867800 |
cataagttgttttcaacttatttccataagctctccaagatagctt |
16867755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 34652045 - 34652098
Alignment:
| Q |
6 |
cataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa |
59 |
Q |
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| T |
34652045 |
cataagctgttttcaacttatttccataagctctccaagatagcttatgaaaaa |
34652098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 12313182 - 12313234
Alignment:
| Q |
6 |
cataagttgcttttaacttatttccattagctctccaagattgcttatgtaaa |
58 |
Q |
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| T |
12313182 |
cataagttgatttcaccttattttcataagctctccaagatagcttatgtaaa |
12313234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 25596092 - 25596036
Alignment:
| Q |
8 |
taagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagttt |
64 |
Q |
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| T |
25596092 |
taagttgttttcaacttattttcataagctctccaagatagcttatgaaaagagttt |
25596036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 14011279 - 14011243
Alignment:
| Q |
22 |
cttatttccattagctctccaagattgcttatgtaaa |
58 |
Q |
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| T |
14011279 |
cttatttccataagctctccaagatagcttatgtaaa |
14011243 |
T |
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