View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-16 (Length: 177)
Name: NF4963-Insertion-16
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 47339486 - 47339315
Alignment:
| Q |
6 |
caccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaattccccaaagcatcagataaggcaacgccaccttcatcgcctat |
105 |
Q |
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| T |
47339486 |
caccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaatcccccaaagcatcagataaggcaactccaccttcatcgcctat |
47339387 |
T |
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| Q |
106 |
ccttgtggaggaacaacgaaaatcctccaagcaagaagaacacttcacaacctcagctatagcacgtgctcc |
177 |
Q |
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| T |
47339386 |
ccttgtggaggaacaacgaaaatcctccaagcaagaagaacgcttcacaacctcagctatagcacgtgctcc |
47339315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 32061991 - 32061944
Alignment:
| Q |
14 |
acacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaa |
61 |
Q |
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| T |
32061991 |
acaccaaacatgttgtcacgcaaatcaagcttcttcaaatgcgtgcaa |
32061944 |
T |
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