View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-2 (Length: 490)
Name: NF4963-Insertion-2
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 376
Target Start/End: Original strand, 46777272 - 46777645
Alignment:
| Q |
7 |
accttaacctttgaacttgccaatgatgtaaatcataattgaaatatttatttttgaaagataacatcatttcttgctttcaaaatataccataaacata |
106 |
Q |
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| T |
46777272 |
accttaacctttgaacttgccaatgatattt-tcataattgaaatatttactt--gaaagataacatcatttcttgctttcaaaatataccataaacata |
46777368 |
T |
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| Q |
107 |
ttaaacaaaaggtacgtgttaagaaaagtggtcgtagaatttaatttataaaa-gtaagaaaatgttcatga-aatatgtttacgaaaattcaaagtacg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| || | || |||||||||||||||||||||||| |
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| T |
46777369 |
ttaaacaaaaggtacgtgttaagaaaagtggtcgtagaatttaatttataaaatgtacg----tgtt-ataagaaaatgtttacgaaaattcaaagtacg |
46777463 |
T |
|
| Q |
205 |
aaattataagcagatagatatatggattcttttcaatgacataccccactatgatgatgaattttgagga--ttcttcttc-aaattgagatacgtcgtt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
46777464 |
aaattataagcagatagatatatggattcttttcaatgacataccccactatgatgatgaattttgaggaatttcttcttcaaaattgagatacgtcgtt |
46777563 |
T |
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| Q |
302 |
ctttct--atttgtgtgtgata--cctcat-ata-ttagcaata-tctttctatatttggatagcatcagtgtatctctctc |
376 |
Q |
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| T |
46777564 |
ctttcttattttgtgtgtgataaccttcataatatttagcaatattctttctatatttggatagcatcagtgtatctctctc |
46777645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 452296 - 452256
Alignment:
| Q |
64 |
aagataacatcatttcttgctttcaaaatataccataaaca |
104 |
Q |
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| T |
452296 |
aagataacatcatttgttgctttcaaaatagaccataaaca |
452256 |
T |
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