View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4963-Insertion-3 (Length: 487)

Name: NF4963-Insertion-3
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4963-Insertion-3
NF4963-Insertion-3
[»] chr6 (8 HSPs)
chr6 (363-487)||(25524764-25524888)
chr6 (363-487)||(26047219-26047341)
chr6 (363-487)||(26049244-26049366)
chr6 (363-487)||(26065528-26065650)
chr6 (363-487)||(26070413-26070535)
chr6 (363-487)||(26085497-26085619)
chr6 (363-486)||(25516543-25516665)
chr6 (37-94)||(34228175-34228233)
[»] chr4 (3 HSPs)
chr4 (288-334)||(23499443-23499489)
chr4 (273-329)||(29391162-29391218)
chr4 (273-334)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (273-334)||(19267374-19267435)
chr7 (282-334)||(30969761-30969813)
chr7 (273-334)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (288-334)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (273-336)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (282-334)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 25524764 - 25524888
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  25524864 gcaacaaaacatgagagttggcaag 25524888  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 26047219 - 26047341
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26047316  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  26047317 gcaacaaaacatgagagttggcaag 26047341  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 26049244 - 26049366
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26049341  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  26049342 gcaacaaaacatgagagttggcaag 26049366  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 26065528 - 26065650
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26065625  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  26065626 gcaacaaaacatgagagttggcaag 26065650  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 26070413 - 26070535
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26070510  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  26070511 gcaacaaaacatgagagttggcaag 26070535  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 26085497 - 26085619
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26085594  T
Q  463 gcaataaaaaacgggagttggcaag 487  Q
    |||| |||| | | |||||||||||    
T  26085595 gcaacaaaacatgagagttggcaag 26085619  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 486
Target Start/End: Original strand, 25516543 - 25516665
Alignment:
Q  363 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 462  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | |||||||||| || ||||     
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcgcat-acaac 25516641  T
Q  463 gcaataaaaaacgggagttggcaa 486  Q
    |||| |||| | | ||||||||||    
T  25516642 gcaacaaaacatgagagttggcaa 25516665  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 34228233 - 34228175
Alignment:
Q  37 tatattagtttgtcttccattgacaagtccacttgtatag-cagtgtaaccggccattg 94  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  34228233 tatataagtttgtcttccgttgacaagtccacttgtatagccagtgtaacctgccattg 34228175  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  288 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  273 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 329  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  273 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  273 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  282 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  273 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  288 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  273 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 336  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  282 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 334  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

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