View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4963-Insertion-4 (Length: 445)

Name: NF4963-Insertion-4
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4963-Insertion-4
NF4963-Insertion-4
[»] chr7 (10 HSPs)
chr7 (222-445)||(8907745-8907970)
chr7 (8-157)||(8907531-8907680)
chr7 (266-399)||(11743038-11743170)
chr7 (330-401)||(31257036-31257107)
chr7 (294-379)||(28080694-28080778)
chr7 (345-401)||(48417535-48417591)
chr7 (345-441)||(21213061-21213159)
chr7 (322-401)||(23796181-23796260)
chr7 (316-401)||(2544438-2544523)
chr7 (235-384)||(48661466-48661614)
[»] chr2 (10 HSPs)
chr2 (235-401)||(15124694-15124859)
chr2 (330-384)||(8424913-8424967)
chr2 (330-384)||(25082542-25082596)
chr2 (323-384)||(15460999-15461060)
chr2 (308-401)||(17854912-17855005)
chr2 (308-401)||(36352142-36352235)
chr2 (309-384)||(5206723-5206798)
chr2 (294-401)||(33606259-33606365)
chr2 (227-379)||(16419297-16419448)
chr2 (345-401)||(40718227-40718283)
[»] chr5 (9 HSPs)
chr5 (308-401)||(20225049-20225142)
chr5 (316-384)||(1564558-1564626)
chr5 (227-379)||(24346639-24346791)
chr5 (316-384)||(25258292-25258360)
chr5 (316-384)||(25322082-25322150)
chr5 (316-379)||(6919420-6919482)
chr5 (330-384)||(33337460-33337514)
chr5 (308-401)||(38731821-38731914)
chr5 (320-384)||(15439012-15439076)
[»] chr8 (5 HSPs)
chr8 (235-384)||(3157470-3157618)
chr8 (330-379)||(8084392-8084441)
chr8 (333-401)||(16050037-16050105)
chr8 (331-401)||(34843125-34843195)
chr8 (308-401)||(10614922-10615015)
[»] chr6 (5 HSPs)
chr6 (316-401)||(6054177-6054262)
chr6 (310-401)||(27993627-27993719)
chr6 (310-379)||(10145735-10145804)
chr6 (316-401)||(6542934-6543019)
chr6 (316-401)||(9705028-9705113)
[»] chr4 (9 HSPs)
chr4 (321-364)||(5398177-5398220)
chr4 (235-376)||(35819039-35819179)
chr4 (316-379)||(21750268-21750331)
chr4 (329-384)||(30305299-30305354)
chr4 (330-401)||(36685880-36685951)
chr4 (330-384)||(18528222-18528276)
chr4 (324-377)||(43743251-43743304)
chr4 (316-384)||(18528448-18528516)
chr4 (346-402)||(35796998-35797054)
[»] chr3 (4 HSPs)
chr3 (235-401)||(13574831-13574997)
chr3 (320-384)||(20303059-20303123)
chr3 (235-379)||(37246764-37246907)
chr3 (316-401)||(54567900-54567985)
[»] chr1 (6 HSPs)
chr1 (316-363)||(16162979-16163026)
chr1 (308-375)||(38733185-38733252)
chr1 (329-384)||(46176751-46176806)
chr1 (330-384)||(25145490-25145544)
chr1 (239-384)||(27413372-27413516)
chr1 (308-364)||(9499290-9499346)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 222 - 445
Target Start/End: Original strand, 8907745 - 8907970
Alignment:
Q  222 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907745 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 8907844  T
Q  322 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttg 419  Q
    |||||||||||||||| ||||||||||||||||   |||||||| |||| |||| ||||||||||||||||||||||  |||||||||||| | ||||||    
T  8907845 catcttgaaaatcgtgattgaatctaacacaactatacaaaactaatttatgagatgatgatttctctcatttataaacacatgttcatgccatcgtttg 8907944  T
Q  420 tttgatgcgagattttttaacaatag 445  Q
    |||||||||||||| |||||||||||    
T  8907945 tttgatgcgagattctttaacaatag 8907970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 8907531 - 8907680
Alignment:
Q  8 gtttcaatttgggagaaacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccattttcatgccatttgatcatgtagggccgacaacaaggac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907531 gtttcaatttgggagaaacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccattttcatgccatttgatcatgtagggccgacaacaaggac 8907630  T
Q  108 ggattcagccgtctattacccaacaactccctctcctgttaaagcctgtc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907631 ggattcagccgtctattacccaacaactccctctcctgttaaagcctgtc 8907680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 11743170 - 11743038
Alignment:
Q  266 gatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaact 365  Q
    ||||| |||||||||  |||| || ||| ||| |||||| | |||| || |||||||||||| |||||||||||| | ||||||||||   ||||||||     
T  11743170 gatagcgaaaatctgagagcaagtggtttaatggatcttga-agaggctctgatatcatcttaaaaatcgtggttaagtctaacacaattccacaaaacc 11743072  T
Q  366 gatttgtgaggtgatgatttctctcatttataaa 399  Q
    | ||||||| ||||||||| ||| ||||||||||    
T  11743071 ggtttgtgatgtgatgattgctcccatttataaa 11743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 31257036 - 31257107
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||| |||| | | || |||||||||    
T  31257036 aaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataaaca 31257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 28080778 - 28080694
Alignment:
Q  294 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    ||||||||||| | |||| || ||||||||||||  |||||||||||| |||||||| |||| |||||||| || |||||| ||||    
T  28080778 caatagatcttga-agaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaaccgacttgtgaagtga 28080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 48417535 - 48417591
Alignment:
Q  345 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||||||| |||||||||| |||||||||| | |||| |||||| |||||||||    
T  48417535 ctaacacaaccccacaaaactggtttgtgaggtcaagattgctctcacttataaaca 48417591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 441
Target Start/End: Original strand, 21213061 - 21213159
Alignment:
Q  345 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttgtttgatgcgagattttttaaca 441  Q
    ||||||||||  ||||||||  | |||||||||||||||| ||| || ||||||  |||||||||||||| | ||| | ||||||| |||| |||||||    
T  21213061 ctaacacaactccacaaaaccaacttgtgaggtgatgattactcccacttataaacacatgttcatgcaatcttttatctgatgcgggattctttaaca 21213159  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 23796181 - 23796260
Alignment:
Q  322 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||||| |||||| |||||||  ||||||||||| |||||||   |||||||||||||||||| | | || |||||||||    
T  23796181 catcttaaaaatcatggttgagcctaacacaaccccacaaaatcaatttgtgaggtgatgattgcccccacttataaaca 23796260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 2544438 - 2544523
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||| ||| || |||||||||||||   ||||||||||| |||||||| || ||||||||||| |||| | | || |||||||||    
T  2544438 tgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 2544523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 48661466 - 48661614
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| ||| || |  || || | ||| ||| |||||||| | ||||| | |||||| |||| || ||||||||| ||  |||||    
T  48661466 ttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtggctcaatggttcttaa-agaggctctgatatcatattagaaatc 48661564  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||  |||||||||| | |||||||| |  ||||||||||| ||||    
T  48661565 gtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggatt 48661614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 15124694 - 15124859
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||| |||||||| || |||| ||||||   ||||||| ||||| ||||||  |||||    
T  15124694 ttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttgg-agagactctgataccatcttagaaatc 15124792  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||||||  |||||||||||| |||||||| || |||||| |||| |||| | |||| |||||||||    
T  15124793 gtggttgggtctaacacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaaca 15124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 8424967 - 8424913
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||||||||   |||||||||| |||||||||| |||||||||||||||||    
T  8424967 aaatcgtggttgagcttaacacaaccccacaaaactggtttgtgaggtgatgatt 8424913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 25082542 - 25082596
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||    
T  25082542 aaatcgtggttggacctaacacaaccccacaaaactggcttgtgaggtgatgatt 25082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 15461060 - 15460999
Alignment:
Q  323 atcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||| |||||  ||||||| |||||||||||| ||||||||||  ||||||||||||||||    
T  15461060 atcttaaaaattatggttgagtctaacacaaccccacaaaactgtcttgtgaggtgatgatt 15460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 17854912 - 17855005
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||| ||||||||| ||  ||||||||||||  |||| ||||||| |||||||| |  ||||||||||| |||| | |||| |||||||||    
T  17854912 agagactctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaaca 17855005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 36352142 - 36352235
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||| | ||| |||||| ||||| ||||||||| ||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  36352142 agagactctaataccatcttaaaaattgtggttgaacctaacacaaccccacaaaaccggcttttgaggtgatgattgcccccacttataaaca 36352235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 5206798 - 5206723
Alignment:
Q  309 gagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||| ||||| ||||||  |||||||| |||| ||| |||||||| ||||||||||| |||| |||||| ||||    
T  5206798 gagactctgataacatcttagaaatcgtgattgagtcttacacaacctcacaaaactgacttgtaaggtgaagatt 5206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 33606259 - 33606365
Alignment:
Q  294 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatt 393  Q
    ||||||||||| | ||||||| ||||||||||||  ||||||||||||   |||||| |||  ||||||||||  ||||||||||| |||| | | || |    
T  33606259 caatagatcttga-agagactttgatatcatcttagaaatcgtggttgtgcctaacataacgccacaaaactggcttgtgaggtgaggattacccccact 33606357  T
Q  394 tataaaca 401  Q
    ||||||||    
T  33606358 tataaaca 33606365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 16419448 - 16419297
Alignment:
Q  227 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 326  Q
    ||||||| ||||||||| |||||||||| ||| || || ||||| | ||| ||| |||||||| |  |||| ||||||   |||| || ||||| |||||    
T  16419448 tattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgg-agaggctctgataccatct 16419350  T
Q  327 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    |  ||||||||||||   |||| |||||| |||||||| |  |||||||||||    
T  16419349 tagaaatcgtggttgggcctaatacaaccccacaaaaccggcttgtgaggtga 16419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 40718227 - 40718283
Alignment:
Q  345 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||||||  |||||||| | ||||||||||||||||| | |||| |||||||||    
T  40718227 ctaacacaactccacaaaaccggtttgtgaggtgatgattgccctcacttataaaca 40718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 20225142 - 20225049
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||| |||||||||||| ||  |||||||||||||| ||||||||||| |||||||  || ||||||||||| ||||   ||||||||||||||    
T  20225142 agaggctatgatatcattttagaaatcgtggttgaacctaacacaaccccacaaaatcgacttgtgaggtgaggattgtcctcatttataaaca 20225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 1564558 - 1564626
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||||||||||  |||||||||||||  ||||||||||| ||||||||||  |||||| |||| ||||    
T  1564558 tgatatcatcttagaaatcgtggttgagcctaacacaaccccacaaaactgtcttgtgatgtgaggatt 1564626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 24346639 - 24346791
Alignment:
Q  227 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 326  Q
    ||||||| ||||||||| |||||||||| ||| || |  ||||  | ||| ||| |||||||| |  |||| ||||||    ||| || ||||| |||||    
T  24346639 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatct 24346738  T
Q  327 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    | |||||||||||||  |||||||||||| |||||||| |  |||||||||||    
T  24346739 taaaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtga 24346791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 25258292 - 25258360
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25258292 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 25322082 - 25322150
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25322082 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 6919420 - 6919482
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||  |||||||||||    
T  6919420 tgataccatcttaaaaatcgtggttgagcctaacacaacctcacaaaactg-cttgtgaggtga 6919482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 33337460 - 33337514
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||| ||| ||||    
T  33337460 aaatcgtggttgaacctaacacaaccccacaaaaccggtttgtgagatgaggatt 33337514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 38731821 - 38731914
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||| |||||||| ||||||  |||| |||||||   ||||||||||| |||||||  || ||||||||||| ||||  ||||| |||||||||    
T  38731821 agaggctatgatagcatcttagaaatggtggttgtgcctaacacaacctcacaaaatcgacttgtgaggtgaggattgttctcacttataaaca 38731914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 15439076 - 15439012
Alignment:
Q  320 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||||||  |||||||||||    ||||||||||| || |||||||| ||||||||||||||||    
T  15439076 atcatcttataaatcgtggttaggcctaacacaaccccataaaactgacttgtgaggtgatgatt 15439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 3157470 - 3157618
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| ||| || |  ||||| ||||| ||| |||||||| || |||| ||| ||   |||| || ||||||||||||  ||||     
T  3157470 ttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatggattttgg-agaggctctgatatcatcttataaatg 3157568  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||||||  ||||||||||| ||||||||||  ||||||||||| ||||    
T  3157569 gtggttgagcctaacacaaccccacaaaactggcttgtgaggtgaggatt 3157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 8084441 - 8084392
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    |||||||||||| | ||||||||||| |||||||||| ||||||||||||    
T  8084441 aaatcgtggttggacctaacacaacctcacaaaactggtttgtgaggtga 8084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 16050105 - 16050037
Alignment:
Q  333 tcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||| |||| |  ||| |||||||||    
T  16050105 tcgtggttgggtctaacacaaccccacaaaactgacttgtgaggtgaggattgccttcacttataaaca 16050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 34843195 - 34843125
Alignment:
Q  331 aatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||||||||| | |||||||||||| |||||||| |  ||||||||||| |||| ||| || |||||||||    
T  34843195 aatcgtggttcagtctaacacaaccccacaaaaccggcttgtgaggtgaggattgctcccacttataaaca 34843125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 10614922 - 10615015
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||| |||||||||||||||  |||||||||||||  |||| |||||| |||||||  |  ||||||||||| |||| | | ||||| ||||||    
T  10614922 agaggctatgatatcatcttataaatcgtggttgagcctaatacaaccccacaaaatcggcttgtgaggtgaagattacccccatttgtaaaca 10615015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 6054262 - 6054177
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||||||||  ||||||||||||| |||||||| | | ||||||||||| || |||||||||||||   |||| |||||||||    
T  6054262 tgatatcatcttagaaatcgtggttgagtctaacacgatcccacaaaactgacttatgaggtgatgattgtcctcacttataaaca 6054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 27993627 - 27993719
Alignment:
Q  310 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatga-tttctctcatttataaaca 401  Q
    ||||| ||||| ||| || |||||||| | || ||||||||||||| ||||||||| | ||||||||||| || |||| ||||||||||||||    
T  27993627 agactctgataccattttaaaaatcgtagatggatctaacacaacctcacaaaactaagttgtgaggtgaggattttccctcatttataaaca 27993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 10145735 - 10145804
Alignment:
Q  310 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    ||||| ||||||||||||  |||| ||||||||  |||||||||||  |||||||||| |||||||||||    
T  10145735 agactctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaactgacttgtgaggtga 10145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 6542934 - 6543019
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||| ||||||  ||||||||||||  |||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  6542934 tgataccatctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaaca 6543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 9705113 - 9705028
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||| ||||||  |||| |||||||   ||||||||||| |||||||| || |||||||||||||||| | | || |||||||||    
T  9705113 tgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaaca 9705028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 5398177 - 5398220
Alignment:
Q  321 tcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 364  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  5398177 tcatcttaaaaatcgtggttgaatctaacacaaccccacaaaac 5398220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 35819039 - 35819179
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| |||||||  ||||||| ||||  |||||| ||||||    
T  35819039 ttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttag-agagactctgatgccatcttaaaaatc 35819137  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgagg 376  Q
    |||||||   ||||||||||| ||||||||||  ||||||||    
T  35819138 gtggttgggcctaacacaacctcacaaaactggcttgtgagg 35819179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 21750268 - 21750331
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
    ||||| |||||| ||| ||||| |||  |||||||||||| |||||||||| ||||||||||||    
T  21750268 tgataccatcttaaaattcgtgattgggtctaacacaacctcacaaaactggtttgtgaggtga 21750331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 30305354 - 30305299
Alignment:
Q  329 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||||||||||||   |||||||||  ||||||| ||||||||||||||||||||    
T  30305354 aaaatcgtggttgagcataacacaactccacaaaattgatttgtgaggtgatgatt 30305299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 36685880 - 36685951
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||||||||||  ||||| |||||| ||||||||||| ||||||||||| |||  | | ||||||||||||    
T  36685880 aaatcgtggttgggtctaatacaaccccacaaaactgacttgtgaggtgaggataacccccatttataaaca 36685951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 18528222 - 18528276
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||||||| |||||||||||||  ||||||  |||||||||||||| ||||    
T  18528222 aaatcgtggttggatctaacacaaccctacaaaatcgatttgtgaggtgaggatt 18528276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 43743304 - 43743251
Alignment:
Q  324 tcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggt 377  Q
    ||||| |||||||| |||  |||||||||||| |||||||| ||||||||||||    
T  43743304 tcttggaaatcgtgtttgggtctaacacaaccccacaaaaccgatttgtgaggt 43743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 18528448 - 18528516
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||| ||||||  ||||||||||||  ||||||| || | |||||||| |||||||||||||| ||||    
T  18528448 tgataccatcttagaaatcgtggttgggtctaacaaaatctcacaaaaccgatttgtgaggtgaggatt 18528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 35796998 - 35797054
Alignment:
Q  346 taacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaacat 402  Q
    |||||||||| |||||||||| |||||||||||| |||| | | || ||||||||||    
T  35796998 taacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaacat 35797054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 13574831 - 13574997
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| ||||||||  ||| || ||||| ||| ||  ||||     
T  13574831 ttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaatt 13574930  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    |||||||   ||||||||||| ||||||||||  ||||||||||| |||||| | || |||||||||    
T  13574931 gtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggatttcccccacttataaaca 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 20303059 - 20303123
Alignment:
Q  320 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||||| ||||||||||||||  ||||||||| | |||||||| | |||||||||||| ||||    
T  20303059 atcatcttaaaaatcgtggttgagcctaacacaatcccacaaaaccggtttgtgaggtgaggatt 20303123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 379
Target Start/End: Original strand, 37246764 - 37246907
Alignment:
Q  235 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 334  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||  |||||||| || ||||  ||||| | | ||||| ||||| |||||| ||||||    
T  37246764 ttggttcgttgacataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttga-atagactttgataccatcttaaaaatc 37246862  T
Q  335 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 379  Q
     | ||||| |||||||||||  |||||| | ||||||||||||||    
T  37246863 attgttgagtctaacacaactccacaaatccgatttgtgaggtga 37246907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 54567985 - 54567900
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 401  Q
    ||||| ||||||  ||||||||||||   ||||||||||| |||||||| |  ||||||||||| |||||| | || |||||||||    
T  54567985 tgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataaaca 54567900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 16163026 - 16162979
Alignment:
Q  316 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaa 363  Q
    |||||||||||| ||||| |||||||| |||||||||||| |||||||    
T  16163026 tgatatcatcttaaaaattgtggttgagtctaacacaaccccacaaaa 16162979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 38733252 - 38733185
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgag 375  Q
    ||||||| ||||| ||||||  |||||||||||||| ||||||||| | |||||||| || |||||||    
T  38733252 agagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccgacttgtgag 38733185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 46176806 - 46176751
Alignment:
Q  329 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    |||||| |||||||  ||||||||| | ||||||||||||||||||| ||||||||    
T  46176806 aaaatcatggttgagcctaacacaaacccacaaaactgatttgtgagatgatgatt 46176751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 25145490 - 25145544
Alignment:
Q  330 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||||||||||||  |||||||||||| |||||||| || ||||||||||| ||||    
T  25145490 aaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggatt 25145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 384
Target Start/End: Complemental strand, 27413516 - 27413372
Alignment:
Q  239 ttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtgg 338  Q
    ||||| |||||||||| ||| || |  ||||| | ||||||| || ||||| ||  ||||||||||   |||| || ||||||||||||  |||||||||    
T  27413516 ttcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaatagatcttgg-agaggctctgatatcatcttagaaatcgtgg 27413418  T
Q  339 ttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 384  Q
    ||| | ||||||||||| |||||||  |  ||||||||||| ||||    
T  27413417 ttggacctaacacaacctcacaaaatcggcttgtgaggtgaggatt 27413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 9499346 - 9499290
Alignment:
Q  308 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 364  Q
    ||||||| ||||||||| ||  ||||||||||||| || ||||||||| ||||||||    
T  9499346 agagactctgatatcattttagaaatcgtggttgagtcgaacacaaccccacaaaac 9499290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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