View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-5 (Length: 378)
Name: NF4963-Insertion-5
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 11458591 - 11458962
Alignment:
| Q |
7 |
acaagatgccaaagaggactataaatattataagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacacaaagctgggaatttgaag |
106 |
Q |
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| T |
11458591 |
acaagatgccaaatagaactataaatattacaagtcaaaaataagtgatttgttgattaaagagacccacaaccactcacacaaagttgagaatttgaag |
11458690 |
T |
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| Q |
107 |
ggatgtgtatacatagttaatccatagtaagtaacctatttcagaaaagctgccatgcaaacaaagacaccttcaaggggatatctttatgccaggtaaa |
206 |
Q |
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| T |
11458691 |
ggatgtgtatacataatttatccttagtaagtaacctatttcagaaaagcttccatgcaaacaaagactccttcaaagggatatctttatgccaggtaaa |
11458790 |
T |
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| Q |
207 |
ttccaactgtaacatgatgaggttcatgactagttaggagccgatacgtttaatgcactgagtacccaaatgtcggatccaaattccaatgtcaatgatc |
306 |
Q |
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| T |
11458791 |
ttccaactgtaacatgatgaggctcctgactagtttggagccgatacgcttaatgcactgagtacccaaatgtcggatccaaattccaatgtcaatgatc |
11458890 |
T |
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| Q |
307 |
ctcaatatacacctacaaagacacattgtgaagaaaaatattacactcctctaccagatcctcctcccatgc |
378 |
Q |
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| T |
11458891 |
ctcaatatacacctacaaagacacattgtgaacaaaaatattacactcctctaccatatcctcctcccatgc |
11458962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 11528115 - 11527925
Alignment:
| Q |
7 |
acaagatgccaaagaggactataaatattataagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacacaaagctgggaatttgaag |
106 |
Q |
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| T |
11528115 |
acaagatgccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacacaaagctgagaatttgaag |
11528016 |
T |
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| Q |
107 |
ggatgtgtatacatagttaatccatagtaagtaacctatttcagaaaagctgccatgcaaacaaagacaccttcaaggggatatctttatg |
197 |
Q |
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| T |
11528015 |
ggatgtgtatacatagtttatccttagtaagtaacctatttcagaaaagctgccatgcaaacaaagacaccttcaaggggatatctttatg |
11527925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 223 - 376
Target Start/End: Complemental strand, 11527927 - 11527774
Alignment:
| Q |
223 |
atgaggttcatgactagttaggagccgatacgtttaatgcactgagtacccaaatgtcggatccaaattccaatgtcaatgatcctcaatatacacctac |
322 |
Q |
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| T |
11527927 |
atgaggttcctgactagttagaagccgatacgtttaatgcactgagtacccaaatgtcggattcaaattccaatgtcaatgatcctcaatatacacctac |
11527828 |
T |
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| Q |
323 |
aaagacacattgtgaagaaaaatattacactcctctaccagatcctcctcccat |
376 |
Q |
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| T |
11527827 |
aaagacacattgtgaagaaaaatattacacttctctactagatcctcctcccat |
11527774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 20515984 - 20516193
Alignment:
| Q |
164 |
caaacaaagacaccttcaaggggatatctttatgccaggtaaattc-----caactgtaacatgatgaggttcatgactagttaggagccgatacgttta |
258 |
Q |
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| T |
20515984 |
caaacaaaaacaccttcaaggggacatctttatgcctggtaaattctgacacaactgtagcaggatgtggttccagactagttagtagctgatacgctcc |
20516083 |
T |
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| Q |
259 |
atgcactgagtacccaaatgtcggatccaaattccaatgtcaatgatcctcaatatacacctacaaagacacattgtgaagaaaaatattacactcctct |
358 |
Q |
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| T |
20516084 |
acgcactgagtacccaaatgtcagttccaaattccaacactaatgatcctcaatctccacttgtaaagacacattttgaagtaaaatcctacactcctct |
20516183 |
T |
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| Q |
359 |
accagatcct |
368 |
Q |
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||| |||||| |
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| T |
20516184 |
accggatcct |
20516193 |
T |
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