View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-6 (Length: 354)
Name: NF4963-Insertion-6
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 54639007 - 54638661
Alignment:
| Q |
8 |
cactcatctaaaaaagtttccgtcgcctacgagctgaaaaatgacacagtttactcctttaggattatatggtgctggaatagaaggatagccaggctta |
107 |
Q |
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| T |
54639007 |
cactcatctaaaaaagtttccgtcgcctacgagctgaaaaatgacacaacttactcctttaggattatatggtgctggaatagaaggatagccagattta |
54638908 |
T |
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| Q |
108 |
taatattattagttcctagttcctactaattacttttctagccttttcctatcaaattcagatattaacaactagattatgtaaatatccaaaaacattc |
207 |
Q |
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| T |
54638907 |
taatattatcagttcctagttcctactaattacttttctagccttttcctatcaaattcagatattaacaactagattatgtaaatatccaaaaacattc |
54638808 |
T |
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| Q |
208 |
cctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttaggcttcactgagctttggacatttgacttcttggcagggcctga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54638807 |
cctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttaggcttcactgagctttggacatttgacttcttggcagggcctga |
54638708 |
T |
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| Q |
308 |
actaggggctgctgccgagaagagactctcgagctccgacatatcaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54638707 |
actaggggctgctgccgagaagagactctcgagctctgacatatcaa |
54638661 |
T |
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