View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4963-Insertion-7 (Length: 138)

Name: NF4963-Insertion-7
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4963-Insertion-7
NF4963-Insertion-7
[»] chr3 (11 HSPs)
chr3 (4-138)||(5848180-5848314)
chr3 (5-138)||(5827452-5827585)
chr3 (13-138)||(20344273-20344398)
chr3 (4-111)||(5526522-5526629)
chr3 (4-137)||(5455666-5455799)
chr3 (4-98)||(5490882-5490976)
chr3 (4-138)||(5503655-5503789)
chr3 (4-124)||(5801777-5801897)
chr3 (4-111)||(5485448-5485555)
chr3 (4-138)||(5853481-5853615)
chr3 (5-98)||(5447143-5447236)
[»] chr6 (1 HSPs)
chr6 (5-98)||(25808576-25808669)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 5848180 - 5848314
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848180 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 5848279  T
Q  104 agttttcagtgaggatagatactcacggttttcct 138  Q
    |||||||||||||||||||||||||||||||||||    
T  5848280 agttttcagtgaggatagatactcacggttttcct 5848314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 5827452 - 5827585
Alignment:
Q  5 acactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcga 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  5827452 acactttccttgctggaatgaagctgagaagtaacttagttactggtccatatagatatctgacttcttggagatcctctgaagatcctgctgacggtga 5827551  T
Q  105 gttttcagtgaggatagatactcacggttttcct 138  Q
    ||||||    |||||||||||||| |||||||||    
T  5827552 gttttcgtataggatagatactcatggttttcct 5827585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 20344398 - 20344273
Alignment:
Q  13 cttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcgagttttcag 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||      
T  20344398 cttgctggaatgaagctgaaaagtaacttagtgactggtccatatagatatctcacttcttggagaacctctgaagatcctgctgtaggtgagttttcgt 20344299  T
Q  113 tgaggatagatactcacggttttcct 138  Q
      ||||| |||||||| |||||||||    
T  20344298 ataggatcgatactcatggttttcct 20344273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 5526629 - 5526522
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | || ||||||||||||| || |    
T  5526629 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagaaaccctcaagatcctgctgaaggtg 5526530  T
Q  104 agttttca 111  Q
    ||| ||||    
T  5526529 agtattca 5526522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 5455799 - 5455666
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||| || |    
T  5455799 aacactttccttgctggaatgaagctgaaaagtaacttagttacgggtccatatagatatctcacttcttggagaaaccctgatgatcctgctgaaggtg 5455700  T
Q  104 agttttcagtgaggatagatactcacggttttcc 137  Q
    ||| ||||   | ||||||||| || ||||||||    
T  5455699 agtgttcatataagatagatacacatggttttcc 5455666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 5490976 - 5490882
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctga 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | || |||||||||||||    
T  5490976 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggagaaaccctcaagatcctgctga 5490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 5503789 - 5503655
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  | || ||||||||||||| || |    
T  5503789 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaagaccctcaagatcctgctgagggtg 5503690  T
Q  104 agttttcagtgaggatagatactcacggttttcct 138  Q
    ||| ||||   | ||||||||| || |||||||||    
T  5503689 agtgttcatataagatagatacacatggttttcct 5503655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 5801777 - 5801897
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | || ||||||||||||| || |    
T  5801777 aacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtg 5801876  T
Q  104 agttttcagtgaggatagata 124  Q
    ||| ||||   ||||||||||    
T  5801877 agtgttcatataggatagata 5801897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 5485555 - 5485448
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  | || ||||||||||||| || |    
T  5485555 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtg 5485456  T
Q  104 agttttca 111  Q
    ||| ||||    
T  5485455 agtgttca 5485448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 5853481 - 5853615
Alignment:
Q  4 aacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcg 103  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  | || ||||||||||||| || |    
T  5853481 aacaatttccttgcgggaatgaagctgaaaagtaatttagttactggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtg 5853580  T
Q  104 agttttcagtgaggatagatactcacggttttcct 138  Q
    ||| ||||   ||||||||||  || |||||||||    
T  5853581 agtgttcatataggatagatatgcatggttttcct 5853615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 5447236 - 5447143
Alignment:
Q  5 acactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctga 98  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  | || |||||||||||||    
T  5447236 acactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcctgctga 5447143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 25808576 - 25808669
Alignment:
Q  5 acactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctga 98  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||  | || |||||||||||||    
T  25808576 acactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcctgctga 25808669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University