View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-8 (Length: 358)
Name: NF4963-Insertion-8
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 3917728 - 3917378
Alignment:
| Q |
8 |
gaaatatcttggatagctacaagaaaacgtcattcttctcatgcttcttacgccatggacaactacaggttggttctttggatataatttcaaaacggtg |
107 |
Q |
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| T |
3917728 |
gaaatatcttggatagctacaagaaaacgtcattcttctcatgcttcttacgccatggacaactacaggttggttctttggatataatttcaaaacggtg |
3917629 |
T |
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| Q |
108 |
ttaaacatatgactgagtgtcaaaattcaaataattttctagatatannnnnnnggggtgataagatgcatctataaataagctaaaggtagcacatgtg |
207 |
Q |
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| T |
3917628 |
ttaaacatatgactgagtgtcaaaattcaaataattttctagatatatttttttggggtgataatatgcatctataaataagctaaaggtagcacacgtg |
3917529 |
T |
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| Q |
208 |
ccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattatacatt |
307 |
Q |
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| T |
3917528 |
ccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattatacatt |
3917429 |
T |
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| Q |
308 |
tcattgcaatatgtactattcatttctagattttcccccttttatcagaga |
358 |
Q |
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| T |
3917428 |
tcattgcaatatgtactattcatttctagattttcccccttttatcagaga |
3917378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 205 - 350
Target Start/End: Original strand, 52801188 - 52801332
Alignment:
| Q |
205 |
gtgccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattatac |
304 |
Q |
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| T |
52801188 |
gtgccttgagattgattctttatttggaaaatagaacttaacaactagtagctacttggtaatcttcgcacaagtgatttacgactaccttctattatac |
52801287 |
T |
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| Q |
305 |
atttcattgcaatatgtactattcatttctagattttccccctttt |
350 |
Q |
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| T |
52801288 |
atttcattgcaatatgtacta-tcatttctagattttccccctttt |
52801332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 205 - 350
Target Start/End: Original strand, 3187231 - 3187375
Alignment:
| Q |
205 |
gtgccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattatac |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3187231 |
gtgccttgagattgattctttatttggaaaatagaacttaacaactagtagctacatggtaatcttcgcacaagtgatttacaactaccttctattatac |
3187330 |
T |
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| Q |
305 |
atttcattgcaatatgtactattcatttctagattttccccctttt |
350 |
Q |
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| T |
3187331 |
attgcattgcaatatgtacta-tcatttctagattttccccctttt |
3187375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 18886535 - 18886392
Alignment:
| Q |
206 |
tgccttgagattgattctttattcggaaaatagaacttgacaactagtagctccttggtaatcttcgcacaagtgatttacaactaccttctattataca |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18886535 |
tgccttgagattgattctttatttggaaaatagaacttaacaactagtagctacttggtaatcttcgcacaagtgatttataactaccttctattataca |
18886436 |
T |
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| Q |
306 |
tttcattgcaatatgtactattcatttctagattttccccctttt |
350 |
Q |
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| T |
18886435 |
ttttattgcaatatgtacta-tcatttctagattttccccctttt |
18886392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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