View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963-Insertion-9 (Length: 350)
Name: NF4963-Insertion-9
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 33200046 - 33200345
Alignment:
| Q |
8 |
atcagtgtctcaatcaagtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcatgtggg |
107 |
Q |
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| T |
33200046 |
atcagtgtctcaatcaagtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgtccatcacttgctgcatgtggg |
33200145 |
T |
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| Q |
108 |
gacgtggggtgttacttttcaatttcttcatattaatgtgataagggtcgttattgtttgctaccatgcacatttatatttaactaacaatcgtcaagac |
207 |
Q |
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| T |
33200146 |
gacgtggggtgttacttttcaatttcttcatattaatgtgataagggtcgttattgtttgttaccatgcacatttatatttaactaacaatcgtcaagac |
33200245 |
T |
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| Q |
208 |
cataacatgatatcattatcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtagatgagtttttcgctataaataaagactttcta |
307 |
Q |
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| T |
33200246 |
cataacatgatattattatcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtggatgagtttttcgctataaataaagactttcta |
33200345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 33200377 - 33200421
Alignment:
| Q |
306 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
350 |
Q |
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| T |
33200377 |
tagatatttatcaacaaagaaaataaaaagactttagattcctag |
33200421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 44770893 - 44770856
Alignment:
| Q |
128 |
aatttcttcatattaatgtgataagggtcgttattgtt |
165 |
Q |
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| T |
44770893 |
aatttcttcatattaatgtgataagtgtcgttattgtt |
44770856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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