View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_high_1 (Length: 659)
Name: NF4963_high_1
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 130 - 649
Target Start/End: Original strand, 41735641 - 41736160
Alignment:
| Q |
130 |
acaacaaaaaccccaacctcgccaaatccatccacgccacccttctcaaaaaccatgaaatacatcatctcaccaccgctctcatttcaacttacatcaa |
229 |
Q |
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| T |
41735641 |
acaacaaaaaccccaacctcgccaaatccatccacgctacccttctcaaaaaccatgaaatacatcatctcaccaccgctctcatttcaacttacatcaa |
41735740 |
T |
|
| Q |
230 |
cctccgtttcttctcctacgcccaccgtctcctcctctctcaatctccccccaacctcgtttcttactccgcactcatctccgctttctccaaatcaaac |
329 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41735741 |
cctccgtctcttctcctacgcccaccgtctcttcctctctcaatctccccccaacatcgtttcttactccgcacttatctccgctttctccaaatcaaac |
41735840 |
T |
|
| Q |
330 |
cgtgaaaaacaatcccttttcctcttccttcacatgataacagtttcatctcttcgcccaaaccactacacttacgtcgccgttttaaccgcttgcaccc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41735841 |
cgtgaaaaacaatcccttttcctcttccttcacatgataacagtttcatctcttcgcccaaaccactacacttacgtcgccgttttaaccgcttgcaccc |
41735940 |
T |
|
| Q |
430 |
gaatcctcaacctccaatttggtcttcagttacacgctgctgttatcaaaactggatatttgaaatccgtttttgtatccaatgcgcttatgtcatttta |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41735941 |
gaatcctcaacctccaatttggtcttcagttacacgctgctgttatcaaaactggatatttgaaatccgtttttgtatccaatgcgcttatgttatttta |
41736040 |
T |
|
| Q |
530 |
ttctaaatgtgggttttataaaaatgctttcaaagtgtttgatgaaatgcctgaaagagatattgcgtcgtggaacactgtaatgtcttgtgcagttcag |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41736041 |
ttctaaatgtgggttttataaaaatgctttcaaagtgtttgatgaaatgcctgaaagagatattgcgtcgtggaacactgtaatgtcttgtgcagttcag |
41736140 |
T |
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| Q |
630 |
gagtttatgtatgatgatgt |
649 |
Q |
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|||||||||||||||||||| |
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| T |
41736141 |
gagtttatgtatgatgatgt |
41736160 |
T |
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