View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_high_11 (Length: 300)
Name: NF4963_high_11
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 2566883 - 2567164
Alignment:
| Q |
18 |
tataggacctcacacttatacgtgctcaacatcaatattcttccattcaatgtaagactttaacttacggatttggattctcggcagccaaatcctctgt |
117 |
Q |
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| T |
2566883 |
tataggacctcacacttatacgtgctcaacatcaatattcttccattcaatgtaagactttaacttacggatttggattctcggcagccaaatcctctgt |
2566982 |
T |
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| Q |
118 |
tgcaccctctgcagcgctattcttgacactttgattaatccatcggctatgaggtgttaaacacgtaacaaaataaaaaatcgtagaacataggatgttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
2566983 |
tgcaccctctgcagcgctattcttgacactttgattaatccatcggctatgaggtgttaaacacgtaacagaataaaaaaccgtagaacataggatgttc |
2567082 |
T |
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| Q |
218 |
tattctattaattcttttatgcttacgcacctgagattaaacatcccaaaatcacaactttattacaatatccatcaatatt |
299 |
Q |
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| T |
2567083 |
tattctattaattcttttatgcttacgaacctgagatcaaacatcccaaaattacaactttattacgatatccatcaatatt |
2567164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 49707492 - 49707530
Alignment:
| Q |
257 |
aacatcccaaaatcacaactttattacaatatccatcaa |
295 |
Q |
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| T |
49707492 |
aacatcccaaaatcactactttattactatatccatcaa |
49707530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 34548609 - 34548647
Alignment:
| Q |
257 |
aacatcccaaaatcacaactttattacaatatccatcaa |
295 |
Q |
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| T |
34548609 |
aacatcccaaaatcactactttattactatatccatcaa |
34548647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 45883470 - 45883508
Alignment:
| Q |
257 |
aacatcccaaaatcacaactttattacaatatccatcaa |
295 |
Q |
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|||||||||||||||| |||||||||| ||||||||||| |
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| T |
45883470 |
aacatcccaaaatcactactttattactatatccatcaa |
45883508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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