View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4963_high_14 (Length: 270)
Name: NF4963_high_14
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 5494348 - 5494220
Alignment:
| Q |
46 |
aagaatacttgctactctagattttgctggttttgagacttgtgtaaattgcattacgggtaaataatctaacaagttcaaaaagggtgcacacagcagc |
145 |
Q |
| |
|
|||| ||||| |||||||||||||| || |||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
5494348 |
aagagtacttactactctagatttttctagttt-gagacttgtgtaaattgcattaagggtaacaaatctaacaagttcaataagggtgcacaaagcagc |
5494250 |
T |
|
| Q |
146 |
taaaccctattaaaaattatacatacaaat |
175 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |
|
|
| T |
5494249 |
taaaacctattaaaaattatacatccaaat |
5494220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 5492048 - 5491979
Alignment:
| Q |
170 |
acaaatatttgttgtccaaacatggacgcaagtagaccgaaatacttcatcacttttatagactattatt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5492048 |
acaaatatttgttgtccaaacatggacgcaagtagaccgaaatacttcatcacttttatagactgttatt |
5491979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 15999904 - 16000053
Alignment:
| Q |
82 |
gacttgtgtaaattgcattacgggtaaataatctaacaagttcaaaaagggtgcacacagcagctaaaccctattaaaaattatacatacaaatatttgt |
181 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||||||| |||||| ||||||| | || || | | ||||||| |||| ||| ||||| |||||||| |
|
|
| T |
15999904 |
gacttgtgtgaattgcattaagggtaagcaatctaacaagctcaaaaggggtgcataaaggagttctaacctattagaaatcatagatacagatatttgt |
16000003 |
T |
|
| Q |
182 |
tgtccaaacatggacgcaagtagaccgaaatacttcatcacttttataga |
231 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||| ||||| |||||||| |
|
|
| T |
16000004 |
tgtccagacatggacgtaagtagtacgaaatactttatcacctttataga |
16000053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 30737458 - 30737338
Alignment:
| Q |
62 |
ctagattttgctggttttgagacttgtgtaaattgcattacgggtaaataatctaacaagttcaaaaagggtgcacacagcagctaaaccctattaaaaa |
161 |
Q |
| |
|
||||||||||||| ||||||| | | ||| |||| ||| | ||||||| |||||| ||||||| ||||||||||||| || | | || ||||||| | | |
|
|
| T |
30737458 |
ctagattttgctgattttgaggcatttgtgaattacatcaagggtaaaaaatctagcaagttcgaaaagggtgcacaaaggaattcaaacctattacata |
30737359 |
T |
|
| Q |
162 |
ttatacatacaaatatttgtt |
182 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
30737358 |
tcatacatacaaatatttgtt |
30737338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University