View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_high_22 (Length: 204)
Name: NF4963_high_22
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 47990829 - 47990657
Alignment:
| Q |
18 |
aaaattaagaaattttgcgaaaacccagctcaatgagtagactgaacaaggaggggcgttatcaactggnnnnnnnntcacaaattgaaggtaaacctaa |
117 |
Q |
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| T |
47990829 |
aaaattaagaaattttgcgaaaacccagctcaatgagtagactgaacagggaggggcgttatcaactg--aaaaaaatcacaaattgaaggtaaacctaa |
47990732 |
T |
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| Q |
118 |
cattaatagtaaaattcgtgagatattagataagagcgcatgcctttgaaggaggaagaatttcagagtataatc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47990731 |
cattaatagtaaaattcgtgagatattagataagagcgcatgcctttgaaggaggaagaatttcagagtagaatc |
47990657 |
T |
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