View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_high_5 (Length: 442)
Name: NF4963_high_5
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 136 - 429
Target Start/End: Original strand, 39366970 - 39367263
Alignment:
| Q |
136 |
actcgaacattctaaactactaaattccaactctccaaaacttaccttaaattaattgctagctaccatagagttttgattaacagaacaaacaaggaga |
235 |
Q |
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| T |
39366970 |
actcgaacattctaaactactaaattccaactctccaaaacttaccttaaattaattgctagctaccatagagttttgattaacagaacaaacaaggaga |
39367069 |
T |
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| Q |
236 |
gtgagaggtatagttagctagctgctcaaattcaatggcttcttcaactcaatgtttcttgtcccaccttgcactttctacccctactacaagtactagg |
335 |
Q |
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| T |
39367070 |
gtgagaggtatagttagctagctgctcaaattcaatggcttcttcaactcaatgtttcttgtcccaccttgcactttctacccctactacaagtactagg |
39367169 |
T |
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| Q |
336 |
ttttcatcacaacgccaagtagtaaacgtacgcaccaaggcaaagcagtttttggtttgtaaggctgagaagcaagcaatacaagaggatgatg |
429 |
Q |
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| T |
39367170 |
ttttcatcacaacgccaagtagtaaacgtacgcagcaaggcaaagcagtttttggtttgtaaggctaagaagcaagcaatacaagaggatgatg |
39367263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39366846 - 39366894
Alignment:
| Q |
20 |
ggcaccactctcatgccttcctaccttatccaatcatccactttccaat |
68 |
Q |
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| T |
39366846 |
ggcaccactctcatgccttcctaccttatccaatcatccactttgcaat |
39366894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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