View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4963_low_3 (Length: 490)

Name: NF4963_low_3
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4963_low_3
NF4963_low_3
[»] chr3 (1 HSPs)
chr3 (1-478)||(9171701-9172178)
[»] chr1 (14 HSPs)
chr1 (36-478)||(9256982-9257418)
chr1 (5-476)||(9466170-9466641)
chr1 (4-478)||(9300292-9300769)
chr1 (167-464)||(8939589-8939887)
chr1 (55-476)||(9364597-9365018)
chr1 (167-461)||(8962519-8962814)
chr1 (55-476)||(9337738-9338156)
chr1 (51-464)||(8927163-8927579)
chr1 (85-475)||(9242056-9242446)
chr1 (325-422)||(9236164-9236261)
chr1 (325-440)||(9377954-9378069)
chr1 (8-62)||(9238409-9238463)
chr1 (323-424)||(9125133-9125234)
chr1 (323-395)||(8978955-8979027)
[»] chr6 (1 HSPs)
chr6 (169-476)||(15909995-15910300)
[»] scaffold0690 (1 HSPs)
scaffold0690 (284-476)||(1806-1999)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 9172178 - 9171701
Alignment:
Q  1 acaatactagtagttgtattagatgaagttgtaggtccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctt 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||  | ||||||| ||| ||||||||||||| ||||| |||||||||||||| ||    
T  9172178 acaatattagtagttgtattagatgaagttgtaggtccataagggtttgaaggaacttgtaacttgtctccatctccttgcagcatttgcatcacagttt 9172079  T
Q  101 tcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcga 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||| | ||    
T  9172078 tcatagacggacgatgcataggttgccattggatgcaccaaagtcccacgattgccaatttttt-cgcaattctaaaatctccctcatcatctattggga 9171980  T
Q  201 tatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctcc 300  Q
    | ||||||||| |||||||||| |||| ||| ||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9171979 tttgtatttctcctccttcaagcaaactgtggatccaatctggatacagaacttgaaaattttcttcatttgtggttgtgtttgtattctttcttcctcc 9171880  T
Q  301 aacaatt-ccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaat 399  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9171879 aacaatttccaatagcaacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaat 9171780  T
Q  400 tttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaatatgtaatttttg 478  Q
     ||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  9171779 gttcctctggctgcagtcattgatatagtactttgattttttgagcacaacttagccaaaccgaagtctgtaatttttg 9171701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 36 - 478
Target Start/End: Original strand, 9256982 - 9257418
Alignment:
Q  36 tccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatg 135  Q
    ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||||||  | ||||||||||          |||    
T  9256982 tccaaaagggttgcaggaaacttttaagttgtctccatctcctttcagcatttgcatcacatctttcatagaccgatgatgcatagg----------atg 9257071  T
Q  136 caccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatc 235  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||    
T  9257072 caccaaagtcccacgattgccaatttttt-cgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctcctttaagcaaaccgtggatc 9257170  T
Q  236 caatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaa-ttccaatagcaatatatcatagctatata 334  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  9257171 caatctggatatagaacttgaaagttttcttcatttgtggttggatttgtattctttcttcctccaacaatttccaatagcaatataccatagctatata 9257270  T
Q  335 tatcagactta----taagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtac 430  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  9257271 tatcagacttataattaagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcagtcatagatatagtac 9257370  T
Q  431 tttgattttttgagcacatcttagccaaaccgaaatatgtaatttttg 478  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  9257371 tttgattttttgagcacatcttagccaaaccaaaatttgtaatttttg 9257418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 5 - 476
Target Start/End: Original strand, 9466170 - 9466641
Alignment:
Q  5 tactagtagttgtattagatgaagttgtaggtccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcat 104  Q
    |||||| ||||| ||||| |||||||||||| |||||||| |||| ||| |||||||| ||||||||||| | ||| | |||||| ||||||| ||||||    
T  9466170 tactagcagttgaattagttgaagttgtaggcccaaaaggattgctggggacttttaacttgtctccatcaccttgtagcatttgtatcacagttttcat 9466269  T
Q  105 agacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatg 204  Q
     || | |||||||||||||||||| |||||||||| |||||| || || ||||         | ||| || |||||||||||||| || |||| ||| ||    
T  9466270 ggatggacgatgcataggttgccactggatgcaccgaagtccaacaatcgccattttttttgg-aatcctgaaatctccctcttcgtcaatagggatttg 9466368  T
Q  205 tatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctccaaca 304  Q
    ||| ||| | |||||||| ||| |||| ||||||||| ||||||||||||| || |||||||||  |||||||| ||||||||||||||||||| ||||     
T  9466369 tatgtctcccccttcaagcaaatcgtggatccaatctggatatagaacttgtaaattttcttcacctgtggttgtgtttgtattctttcttcctgcaacc 9466468  T
Q  305 at-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttc 403  Q
    || ||||| | ||| ||| |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||  |||    
T  9466469 atctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgttc 9466568  T
Q  404 ctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaatatgtaatttt 476  Q
    || ||||||| |||||||| |  |||||| ||||||| ||||||||||||||||||||||| | |||||||||    
T  9466569 ctttggctgcggtcatagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtctgtaatttt 9466641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 4 - 478
Target Start/End: Complemental strand, 9300769 - 9300292
Alignment:
Q  4 atactagtagttgtattagatgaagttgtaggtccaaaagggttgcagggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttca 103  Q
    ||||||| ||||||||| |  ||||| |  || |||||||| ||||  ||||||||||  |||||||| |||| ||| | |||||||| ||||| |||||    
T  9300769 atactagcagttgtattggtggaagtcgatggcccaaaaggattgcgtggaacttttagcttgtctccctctccttgtaacatttgcaacacagttttca 9300670  T
Q  104 tagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccct---cttcatctatagcga 200  Q
    | |||| |||||||||||||||||| || |||||||| | |||||| |||||||         |||||||| |||||  |||   |||||||||||| ||    
T  9300669 tggacggacgatgcataggttgccactgaatgcaccataatcccacaattgccatttttttt-gcaattctgaaatcatcctgttcttcatctataggga 9300571  T
Q  201 tatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttgtattctttcttcctcc 300  Q
    | ||||| ||| |||||||||  |||| ||| ||||||||| |||||| ||||||     || ||||| ||||||||| ||| | |||||| ||||| ||    
T  9300570 tttgtatgtctcctccttcaactaaactgtggatccaatctggatataaaacttgtggacttccttcacttgtggttgtgttcgaattcttccttccccc 9300471  T
Q  301 aacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaat 399  Q
    ||| || ||||  | ||| ||  |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9300470 aaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaat 9300371  T
Q  400 tttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaatatgtaatttttg 478  Q
     ||||| |||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||    
T  9300370 gttcctttggccgcggtcatagatatagtactttgatttttcgagcacatcttagccaaaccgaagtctgtaatttttg 9300292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 167 - 464
Target Start/End: Complemental strand, 8939887 - 8939589
Alignment:
Q  167 gcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttctt 266  Q
    |||||||||||||||||||||||||| || | ||||| ||  ||| | |||||||  ||||| || ||||||||| |||| |  |||||||| |||||||    
T  8939887 gcaattctaaaatctccctcttcatcaattgggatatatacgtctccaccttcaaataaaccatggatccaatctggatacaatacttgaaaattttctt 8939788  T
Q  267 catttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtt 365  Q
    ||  ||||  ||  || |||||||||||||||||||| || ||||  ||||| ||| | ||||| |||||||||||||||||||||||||| ||||||||    
T  8939787 cacctgtgactgtcttagtattctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtt 8939688  T
Q  366 tctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaa 464  Q
    || |||||||||||| ||||||||||| |||||  |||| |||||||| ||||| ||||  |||||||||||||| ||||||| |||||| ||||||||    
T  8939687 tcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcattgatactgtactttgatttttggagcacagcttagctaaaccgaa 8939589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 55 - 476
Target Start/End: Complemental strand, 9365018 - 9364597
Alignment:
Q  55 acttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattg 154  Q
    |||||||| ||||| || |||| ||| | |||||| ||||||  |||||| | || ||| |||| ||| ||||||||||| ||||| ||||||||  |||    
T  9365018 acttttaacttgtccccctctccttgaagcatttgtatcacatatttcattgtcggacggtgcaaagggtgccattggatacaccatagtcccacagttg 9364919  T
Q  155 ccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaactt 254  Q
    ||||        | |||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| |||  ||| ||||| ||| ||||   |||||    
T  9364918 ccaatttttttgg-aattctaaaatctccctcttcatcaatagggatatgtatatctcctccttcaagcaaattgtggatccagtctggatactcaactt 9364820  T
Q  255 gaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaatt-ccaatagcaatatatcatagctatatatatcagacttataagagac 353  Q
    | |  ||||||||     |  |||  ||||||||||||||||||||||| ||| |||| |  || ||| | || || |||||||||||||||||||||||    
T  9364819 gtatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagac 9364720  T
Q  354 attaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatctta 453  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||| ||||  | ||||||||||| |||| | |||||||||||||||| || |||||     
T  9364719 attaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttgattttttgaacatatcttg 9364620  T
Q  454 gccaaaccgaaatatgtaatttt 476  Q
    |||||||| |||| |||||||||    
T  9364619 gccaaaccaaaatctgtaatttt 9364597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 167 - 461
Target Start/End: Complemental strand, 8962814 - 8962519
Alignment:
Q  167 gcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttctt 266  Q
    ||||||||| ||||||| |||||||| |||| ||||||||| ||| | |||||||  |||||||| ||||||||| |||| | ||||||||| |||||||    
T  8962814 gcaattctataatctccatcttcatcaatagggatatgtatatctcccccttcaaacaaaccgtggatccaatctggatacaaaacttgaaaattttctt 8962715  T
Q  267 catttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtt 365  Q
    ||| ||||  ||  || ||||||||||||||||| || || ||||  ||||| ||  ||||||| ||||||||||| |||||||||||||| ||||||||    
T  8962714 catctgtgactgtcttagtattctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtt 8962615  T
Q  366 tctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaacc 461  Q
    || |||||| ||||| |||||||||||||||||| |||| || || |||||||| ||||   || |||||||||| ||||||| ||| || |||||    
T  8962614 tcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaatagtttgatttttggagcacaacttggctaaacc 8962519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 476
Target Start/End: Complemental strand, 9338156 - 9337738
Alignment:
Q  55 acttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattg 154  Q
    |||||||| ||||| || |||| ||| | |||||||||||||| |||||| | || |||||||| ||| ||||||||||| ||||| ||||||||  |||    
T  9338156 acttttaacttgtccccctctccttggagcatttgcatcacagatttcattgtcggacgatgcaaagggtgccattggatacaccatagtcccacagttg 9338057  T
Q  155 ccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaactt 254  Q
    ||||        | ||||||||||||||| |||||||| |||| ||| ||||| |||   |||||||| |||  ||| ||||| ||| ||||   |||||    
T  9338056 ccaatttttttgg-aattctaaaatctccgtcttcatcaatagggatttgtatctct---ccttcaagcaaattgtggatccagtctggatactcaactt 9337961  T
Q  255 gaaagttttcttcatttgtggttgggtttgtattctttcttcctccaacaatt-ccaatagcaatatatcatagctatatatatcagacttataagagac 353  Q
    | |  ||||||||     |  |||  ||||||||||||||||||||||| ||| |||| |  || ||| | || || |||||||||||||||||||||||    
T  9337960 gtatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagac 9337861  T
Q  354 attaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatctta 453  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||| ||||  | ||||||||||| |||| |  ||||||||||||||| || |||||     
T  9337860 attaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgacactttgattttttgaacatatcttg 9337761  T
Q  454 gccaaaccgaaatatgtaatttt 476  Q
    |||||||| |||| |||||||||    
T  9337760 gccaaaccaaaatctgtaatttt 9337738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 51 - 464
Target Start/End: Complemental strand, 8927579 - 8927163
Alignment:
Q  51 gggaacttttaagttgtctccatctctttgcatcatttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacg 150  Q
    |||||||||||| |||||||| |||| ||| | ||| |||| ||||| |||||| ||||  |||||||  |  ||||| || |||||||||||||| ||     
T  8927579 gggaacttttaatttgtctccctctccttgaagcatctgcaccacagttttcatggacggccgatgcacggagtgccactgaatgcaccaaagtccgaca 8927480  T
Q  151 attgccaannnnnnncgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatataga 250  Q
    ||||| |         ||||||||| |||||||||||||||| || | ||||| ||  ||| | |||||||| ||||| || ||||||||| |||| |||    
T  8927479 attgctagttttttt-gcaattctacaatctccctcttcatcaattgggatatatacgtctccaccttcaagtaaaccatggatccaatctggatacaga 8927381  T
Q  251 acttgaaagttttcttc---atttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttat 346  Q
    ||||| || ||||||||   |   || ||||  || |||||||||||||||||||| || || |  | ||| ||| | ||||| ||||||||||||||||    
T  8927380 acttggaaattttcttcgccaccagtagttgttttagtattctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttat 8927281  T
Q  347 aagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagca 446  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||  || || |||||||| |||||    
T  8927280 aagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcccctggctgcagtcatcgatacagtgctatgatttttagagca 8927181  T
Q  447 catcttagccaaaccgaa 464  Q
    || ||| || ||||||||    
T  8927180 cagcttcgctaaaccgaa 8927163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 85 - 475
Target Start/End: Original strand, 9242056 - 9242446
Alignment:
Q  85 atttgcatcacagctttcatagacgaacgatgcataggttgccattggatgcaccaaagtcccacgattgccaannnnnnncgcaattctaaaatctccc 184  Q
    ||||| ||||||  |||||| | || |||||||| ||| ||||||||||| ||||| ||||||||  |||||||        | ||||||||||||||||    
T  9242056 atttgtatcacaaatttcattgccggacgatgcaaagggtgccattggatacaccatagtcccacagttgccaatttttttgg-aattctaaaatctccc 9242154  T
Q  185 tcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttcatttgtggttgggtttg 284  Q
    |||||||| |||| ||| ||||| ||| |||||||||| |||  ||| ||||| ||| ||||   || ||| |  |||||||||      ||||  ||||    
T  9242155 tcttcatcaatagggatttgtatatctcctccttcaagcaaattgtggatccagtctggatactcaatttgtatattttcttcaccacctgttgtttttg 9242254  T
Q  285 tattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcggg 383  Q
    ||||||||||||||||||| || ||||| |  || ||| | || || |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||    
T  9242255 tattctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcagg 9242354  T
Q  384 tgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaatatgtaattt 475  Q
    ||||||||| |||| | ||||  | || |||||||| ||||   ||||||||||||| || |||||||| |||||||| |||| ||||||||    
T  9242355 tgccatgtagcctactgttcccttagccgcagtcatggatacaatactttgatttttcgaacacatcttggccaaaccaaaatctgtaattt 9242446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 9236164 - 9236261
Alignment:
Q  325 tagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcataga 422  Q
    |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||||| ||  ||||||| ||||||||||||||    
T  9236164 tagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgcagtcataga 9236261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 440
Target Start/End: Complemental strand, 9378069 - 9377954
Alignment:
Q  325 tagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagata 424  Q
    |||||||| ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||| |    
T  9378069 tagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagctgcggttatagaca 9377970  T
Q  425 tggtactttgattttt 440  Q
      ||||||||||||||    
T  9377969 ccgtactttgattttt 9377954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 9238463 - 9238409
Alignment:
Q  8 tagtagttgtattagatgaagttgtaggtccaaaagggttgcagggaacttttaa 62  Q
    |||||||| |||| | ||||| ||||| ||||||||||||| |||||||||||||    
T  9238463 tagtagttttatttgctgaagctgtagatccaaaagggttggagggaacttttaa 9238409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 424
Target Start/End: Original strand, 9125133 - 9125234
Alignment:
Q  323 catagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcataga 422  Q
    |||| ||||| ||||||||||||  ||| ||||| ||||| ||||  || |||||||| |||||||| ||||| ||  ||||||| || |||||||| ||    
T  9125133 cataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatgga 9125232  T
Q  423 ta 424  Q
    ||    
T  9125233 ta 9125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 8978955 - 8979027
Alignment:
Q  323 catagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcc 395  Q
    |||||||||| |||||||| |||  ||| ||||||||||| ||||| || | |||||| |||||||| |||||    
T  8978955 catagctataaatatcagatttaagagacacattaccaaaatttcttgacagaacttcaggtgccatatatcc 8979027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 169 - 476
Target Start/End: Original strand, 15909995 - 15910300
Alignment:
Q  169 aattctaaaatctccctcttcatctatagcgatatgtatttcttctccttcaagaaaaccgtgaatccaatctcgatatagaacttgaaagttttcttca 268  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||   |||||||  |||  ||| ||||| ||| ||||   |||||| | |||||| |||    
T  15909995 aattctaaaatctccctcttcatcaatagggatttgtatatct---ccttcaaacaaattgtggatccagtctggatactcaacttgtatgttttcatca 15910091  T
Q  269 tttgtggttgggtttgtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttc 367  Q
        | ||||  ||||||||||||||||||||||| || ||||| |  || ||| | || || |||||||| ||||||||||||||||| ||||| ||||    
T  15910092 ccacttgttgtttttgtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttc 15910191  T
Q  368 tagaaaaaacttcgggtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaata 467  Q
    ||||||||||||| ||||||||||| |||||| ||||  | ||| ||||||| ||||   ||||||||||||| || ||||||||||||||||| ||||     
T  15910192 tagaaaaaacttcaggtgccatgtagcctaatgttcccttagctacagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatc 15910291  T
Q  468 tgtaatttt 476  Q
    ||| |||||    
T  15910292 tgtgatttt 15910300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 476
Target Start/End: Complemental strand, 1999 - 1806
Alignment:
Q  284 gtattctttcttcctccaacaat-tccaatagcaatatatcatagctatatatatcagacttataagagacattaccaaagtttctagaaaaaacttcgg 382  Q
    |||||||||||||||||||| || ||||| |  || ||| | || || |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |    
T  1999 gtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcag 1900  T
Q  383 gtgccatgtatcctaattttcctctggctgcagtcatagatatggtactttgattttttgagcacatcttagccaaaccgaaatatgtaatttt 476  Q
    |||||||||| |||||| ||||  | |||| |||||| ||||   ||||||||||||| || ||||||||||||||||| |||| ||| |||||    
T  1899 gtgccatgtagcctaatgttcccttagctgtagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgatttt 1806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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