View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_low_4 (Length: 445)
Name: NF4963_low_4
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Complemental strand, 46600798 - 46600370
Alignment:
| Q |
6 |
cacagacaaaagtagtcaaaaagactttcgaccccacttgcaaa--tactacannnnnnnat--attataattttatgttgtttgttagtaaacattatn |
101 |
Q |
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| T |
46600798 |
cacaaacaaaagtagtcaaaaagactttcgaccccacttgcaaaaatactacatttttttatttattataattttatgttgtttgttagtaaacattata |
46600699 |
T |
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| Q |
102 |
nnnnnnn--cgtttgttgtgtgtcaaacagctcaacttttcctgtcatgtcatgttttaaacgcacccaacaaaattgtccattaactactacttctacc |
199 |
Q |
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| T |
46600698 |
aaaaaaaaacgtttgttgtgtgtcaaacagctcaacttttcctgtcatgtcatgttttaaacgcacccaacaaaattgtccattaactactacttctacc |
46600599 |
T |
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| Q |
200 |
ctaatactattatattcactcaccgtcttaatttccctgccctacttattcagtacgagaatgatttttatgatttatataccctctttcatttctattt |
299 |
Q |
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| T |
46600598 |
ctaatactattatattcactcaccgtcttaatttccctgccctacttattcagtacgagaatgatttt-atgatttatataccctctttcatttctattt |
46600500 |
T |
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| Q |
300 |
ttgtgctatctttcttgctcctccgtatacagacctgtattgtatatatttgcattattactctctagctacttacttaatcattctaatcttataatct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46600499 |
ttgtgctatctttcttgctcctccgtatacagacctgtattgtatatatttgcattattactctctagctacttacttaatcattctaatcttataatct |
46600400 |
T |
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| Q |
400 |
acagctgtgaaaatgtggtaccgaacctat |
429 |
Q |
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| T |
46600399 |
acagctgtgaaaatgtggtaccgaacctat |
46600370 |
T |
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