View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_low_6 (Length: 409)
Name: NF4963_low_6
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 5273005 - 5272620
Alignment:
| Q |
16 |
atatcaactccaaaccaagaaagaaccaactttgagagcagtgagagannnnnnncaggtcattgaaatttttcacattcactttctcacatctcaaagn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273005 |
atatcaactccaaaccaagaaagaaccaactttgagagcagtgagagatttttttcaggtcattgaaatttttcacattcactttctcacatctcaaaga |
5272906 |
T |
|
| Q |
116 |
nnnnnntgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272905 |
aaaaaatgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccga |
5272806 |
T |
|
| Q |
216 |
tttgttcaatcagctccttcccactatgccttggaattccgtcatggtatgttttttattctcttcatattcatgtgttctattttcattcattagaaat |
315 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272805 |
tttgttcaatcagctccttcccacaatgccttggaattccgtcatggtatgttttttattctcttcatattcatgtgttctattttcattcattagaaat |
5272706 |
T |
|
| Q |
316 |
tctgcatggtgttaatttgcataaatatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272705 |
tctgcatggtgttaatttgcataaatatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatg |
5272620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 276
Target Start/End: Complemental strand, 5276919 - 5276716
Alignment:
| Q |
73 |
ggtcattgaaatttttcacattcactttctcacatctcaaagnnnnnnntgtctaataatattgttattatttttgactttgacaaaaccatcattgatt |
172 |
Q |
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||||||| ||||||||||||||| ||||||||| |||||||| || ||||||| ||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
5276919 |
ggtcattcaaatttttcacattctctttctcacctctcaaagagaaaaatgactaataacattgttattgtttttgattttgacaaaacgatcattgatt |
5276820 |
T |
|
| Q |
173 |
gtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactatgccttggaattccgtcatggtatgtttttt |
272 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||| || |||||||| ||||| |
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| T |
5276819 |
gtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatgcttttt |
5276720 |
T |
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| Q |
273 |
attc |
276 |
Q |
| |
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|||| |
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| T |
5276719 |
attc |
5276716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 122 - 272
Target Start/End: Original strand, 5249649 - 5249799
Alignment:
| Q |
122 |
tgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgtt |
221 |
Q |
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||||||||||||||||| | ||||||| ||||| |||||||| ||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
5249649 |
tgtctaataatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgtt |
5249748 |
T |
|
| Q |
222 |
caatcagctccttcccactatgccttggaattccgtcatggtatgtttttt |
272 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5249749 |
caatcagctccttcccactatgccttggaattctctcatggtatgtttttt |
5249799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 5268884 - 5269047
Alignment:
| Q |
122 |
tgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgtt |
221 |
Q |
| |
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|||||||||||||||| || |||| ||||| || |||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
5268884 |
tgtctaataatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgtt |
5268983 |
T |
|
| Q |
222 |
caatcagctccttcccactatgccttggaattccgtcatggtatgttttttattctcttcatat |
285 |
Q |
| |
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|||||| ||||||||||||||||||| ||||| ||||||||||||||| | ||| ||||||| |
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| T |
5268984 |
caatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatat |
5269047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 14944321 - 14944357
Alignment:
| Q |
365 |
tgttttggttttgaaattataggacaaaatgatgatg |
401 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| |
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| T |
14944321 |
tgttttggttttggaattataggacaagatgatgatg |
14944357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 43110965 - 43110843
Alignment:
| Q |
129 |
taatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcag |
228 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||| ||||| |||||||| ||| | ||||||||||||||||||| |||||||||||| | |
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| T |
43110965 |
taatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaa |
43110866 |
T |
|
| Q |
229 |
ctccttcccactatgccttggaa |
251 |
Q |
| |
|
|| ||||||| ||||| ||||| |
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| T |
43110865 |
cttgttcccaccatgccatggaa |
43110843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 26315843 - 26315741
Alignment:
| Q |
143 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat |
242 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||||| || ||||| ||| | |||||||||| ||||||| |||||||||||||| ||| ||||||| || |
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| T |
26315843 |
ttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccaccat |
26315744 |
T |
|
| Q |
243 |
gcc |
245 |
Q |
| |
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||| |
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| T |
26315743 |
gcc |
26315741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 43105487 - 43105440
Alignment:
| Q |
142 |
atttttgactttgacaaaaccatcattgattgtgatagtgataattgg |
189 |
Q |
| |
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||||||||||||||| ||| |||||||| |||||||||||||||||| |
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|
| T |
43105487 |
atttttgactttgactcaacaatcattgaatgtgatagtgataattgg |
43105440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 19569148 - 19569243
Alignment:
| Q |
152 |
ttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactatgcctt |
247 |
Q |
| |
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|||| |||||| | |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
19569148 |
ttgataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctt |
19569243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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